Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.44□□□□□ -1.38
MSX2P35548 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC6.44□□□□□ -1.38
MSX2P35548 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 AL356057.1-201ENST00000533798 831 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.44□□□□□ -1.38
MSX2P35548 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC6.44□□□□□ -1.38
MSX2P35548 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 AGGF1P9-201ENST00000561884 913 ntBASIC6.44□□□□□ -1.38
MSX2P35548 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 AL035410.2-201ENST00000604963 864 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC004775.1-201ENST00000607389 753 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC012511.1-201ENST00000608140 449 ntBASIC6.44□□□□□ -1.38
MSX2P35548 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 MIR6726-201ENST00000613751 61 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC116165.3-201ENST00000614524 400 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC008121.2-201ENST00000614647 523 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC010333.3-201ENST00000615100 402 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC025016.1-201ENST00000616746 682 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC025287.2-201ENST00000621911 668 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC079456.1-201ENST00000624010 480 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 AC007012.2-201ENST00000623206 1676 ntBASIC6.44□□□□□ -1.38
MSX2P35548 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.44□□□□□ -1.38
MSX2P35548 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
MSX2P35548 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 MTND4P8-201ENST00000514997 1362 ntBASIC6.44□□□□□ -1.38
MSX2P35548 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX2P35548 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.43□□□□□ -1.38
MSX2P35548 SLC2A3P2-201ENST00000331747 1480 ntBASIC6.43□□□□□ -1.38
MSX2P35548 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX2P35548 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 STAG3L4-201ENST00000352103 530 ntBASIC6.43□□□□□ -1.38
MSX2P35548 RMRPP5-201ENST00000411156 267 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC017035.1-201ENST00000411999 1115 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC096537.2-201ENST00000413707 714 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.43□□□□□ -1.38
MSX2P35548 AC009518.2-201ENST00000418056 731 ntBASIC6.43□□□□□ -1.38
MSX2P35548 MTCO3P4-201ENST00000419236 787 ntBASIC6.43□□□□□ -1.38
MSX2P35548 KRR1P1-201ENST00000419430 803 ntBASIC6.43□□□□□ -1.38
MSX2P35548 USP9YP21-201ENST00000420603 432 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 AL139415.1-201ENST00000424862 352 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 MTCO3P5-201ENST00000433620 714 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC000362.1-201ENST00000433725 425 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 AC092447.2-201ENST00000435487 669 ntBASIC6.43□□□□□ -1.38
MSX2P35548 OR5G3-201ENST00000435756 929 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
MSX2P35548 AC108039.2-201ENST00000440214 359 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC6.43□□□□□ -1.38
MSX2P35548 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX2P35548 AC009237.4-201ENST00000441078 238 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AL355355.1-201ENST00000442900 793 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX2P35548 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 FAM74A1-201ENST00000465257 623 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX2P35548 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 EIF1P7-201ENST00000487533 337 ntBASIC6.43□□□□□ -1.38
MSX2P35548 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX2P35548 AC121161.1-201ENST00000510606 652 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC108103.1-201ENST00000511286 446 ntBASIC6.43□□□□□ -1.38
MSX2P35548 Y_RNA.655-201ENST00000515919 96 ntBASIC6.43□□□□□ -1.38
MSX2P35548 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX2P35548 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX2P35548 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX2P35548 OR4A42P-201ENST00000531397 938 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC079866.1-201ENST00000534985 1220 ntBASIC6.43□□□□□ -1.38
MSX2P35548 ATP5J2P4-201ENST00000538774 267 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 370.9 ms