Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 RN7SKP77-201ENST00000363261 353 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC099782.1-201ENST00000425889 474 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 RPSAP32-201ENST00000432681 526 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC097359.1-201ENST00000447946 463 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 OR4A41P-201ENST00000533053 928 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC121758.1-202ENST00000556917 658 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC009120.3-201ENST00000563335 499 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC093524.1-201ENST00000564266 1094 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC005332.4-201ENST00000592752 579 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 MIR6889-201ENST00000613185 59 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 AC018659.2-201ENST00000624690 715 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.3□□□□□ -1.4
VPS35Q96QK1 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 DOCK11P1-201ENST00000553480 5932 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS35Q96QK1 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.3□□□□□ -1.4
VPS35Q96QK1 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 RPL11P4-201ENST00000332269 436 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 AL139805.1-201ENST00000407837 289 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 OR5W1P-201ENST00000423705 938 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 CLNS1AP1-201ENST00000435954 682 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 SOCS5P1-201ENST00000440415 949 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 YRDCP3-201ENST00000456507 480 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 RPS27P20-201ENST00000492051 246 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 AL117692.1-201ENST00000494283 713 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 AC010343.2-201ENST00000510162 224 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 AC009237.12-201ENST00000604755 742 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 AL139041.1-201ENST00000605480 610 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 uc_338.29-201ENST00000615099 168 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 TCL6_3.1-201ENST00000619064 137 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 AL157762.1-201ENST00000619612 415 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 OR7E91P-202ENST00000642062 1198 ntBASIC6.29□□□□□ -1.4
VPS35Q96QK1 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms