Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL023284.3-201ENST00000407767 334 ntBASIC5.92□□□□□ -1.46
SOX3P41225 TMA16P2-201ENST00000413187 601 ntBASIC5.92□□□□□ -1.46
SOX3P41225 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC5.92□□□□□ -1.46
SOX3P41225 RPS17P17-201ENST00000419392 409 ntBASIC5.92□□□□□ -1.46
SOX3P41225 RPL24P2-201ENST00000421023 475 ntBASIC5.92□□□□□ -1.46
SOX3P41225 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.92□□□□□ -1.46
SOX3P41225 AL354893.1-201ENST00000433735 348 ntBASIC5.92□□□□□ -1.46
SOX3P41225 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.92□□□□□ -1.46
SOX3P41225 AC009237.1-201ENST00000442127 744 ntBASIC5.92□□□□□ -1.46
SOX3P41225 OR2L9P-201ENST00000444456 913 ntBASIC5.92□□□□□ -1.46
SOX3P41225 MGAT2P1-201ENST00000449718 797 ntBASIC5.92□□□□□ -1.46
SOX3P41225 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC5.92□□□□□ -1.46
SOX3P41225 CCNJP2-201ENST00000457810 1163 ntBASIC5.92□□□□□ -1.46
SOX3P41225 RN7SL552P-201ENST00000462094 276 ntBASIC5.92□□□□□ -1.46
SOX3P41225 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.92□□□□□ -1.46
SOX3P41225 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.92□□□□□ -1.46
SOX3P41225 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC5.92□□□□□ -1.46
SOX3P41225 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 AC008055.1-201ENST00000547032 609 ntBASIC5.92□□□□□ -1.46
SOX3P41225 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.92□□□□□ -1.46
SOX3P41225 AC023310.2-201ENST00000553844 547 ntBASIC5.92□□□□□ -1.46
SOX3P41225 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.92□□□□□ -1.46
SOX3P41225 TPRX1P1-201ENST00000557620 319 ntBASIC5.92□□□□□ -1.46
SOX3P41225 MIR3154-201ENST00000577829 84 ntBASIC5.92□□□□□ -1.46
SOX3P41225 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.92□□□□□ -1.46
SOX3P41225 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 AC021422.1-201ENST00000621212 473 ntBASIC5.92□□□□□ -1.46
SOX3P41225 MIR6806-201ENST00000622141 64 ntBASIC5.92□□□□□ -1.46
SOX3P41225 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.92□□□□□ -1.46
SOX3P41225 AC079753.1-201ENST00000623243 3868 ntBASIC5.92□□□□□ -1.46
SOX3P41225 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.92□□□□□ -1.46
SOX3P41225 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.92□□□□□ -1.46
SOX3P41225 ABCA11P-202ENST00000504019 2110 ntBASIC5.92□□□□□ -1.46
SOX3P41225 CASC19-246ENST00000641625 1606 ntBASIC5.92□□□□□ -1.46
SOX3P41225 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SOX3P41225 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 RPS21P8-201ENST00000413365 247 ntBASIC5.91□□□□□ -1.46
SOX3P41225 DHFRP2-201ENST00000414224 547 ntBASIC5.91□□□□□ -1.46
SOX3P41225 MTND2P12-201ENST00000417560 1252 ntBASIC5.91□□□□□ -1.46
SOX3P41225 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.91□□□□□ -1.46
SOX3P41225 CYCSP52-201ENST00000422857 310 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 AL157884.1-201ENST00000424561 454 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.91□□□□□ -1.46
SOX3P41225 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 RN7SL168P-201ENST00000463821 279 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AC104339.1-201ENST00000465478 348 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AC112484.3-201ENST00000505910 329 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AC091965.3-201ENST00000506236 208 ntBASIC5.91□□□□□ -1.46
SOX3P41225 RN7SKP67-201ENST00000515905 235 ntBASIC5.91□□□□□ -1.46
SOX3P41225 RNA5SP441-201ENST00000516809 88 ntBASIC5.91□□□□□ -1.46
SOX3P41225 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC5.91□□□□□ -1.46
SOX3P41225 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.91□□□□□ -1.46
SOX3P41225 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.91□□□□□ -1.46
SOX3P41225 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 RN7SL475P-201ENST00000583379 298 ntBASIC5.91□□□□□ -1.46
SOX3P41225 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AL354950.1-201ENST00000614150 568 ntBASIC5.91□□□□□ -1.46
SOX3P41225 MIR6811-201ENST00000620409 58 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AL683826.1-201ENST00000624104 627 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.91□□□□□ -1.46
SOX3P41225 AC111152.1-202ENST00000635848 339 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AC011369.2-201ENST00000624423 1567 ntBASIC5.91□□□□□ -1.46
SOX3P41225 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.91□□□□□ -1.46
SOX3P41225 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms