Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 RN7SKP148-201ENST00000410179 275 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC096533.1-201ENST00000411645 353 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 DHFRP2-201ENST00000414224 547 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AL161725.1-203ENST00000415004 1081 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 AC016907.1-201ENST00000419483 435 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC091492.1-201ENST00000419844 272 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 AC130472.1-201ENST00000427885 309 ntBASIC6.45□□□□□ -1.38
MSX2P35548 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX2P35548 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX2P35548 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC6.45□□□□□ -1.38
MSX2P35548 AL031963.2-201ENST00000433761 398 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 AC006994.1-201ENST00000438212 839 ntBASIC6.45□□□□□ -1.38
MSX2P35548 NQO1-204ENST00000439109 924 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 ATP5G1P6-201ENST00000451206 412 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC010878.1-201ENST00000456500 1047 ntBASIC6.45□□□□□ -1.38
MSX2P35548 TAAR3P-201ENST00000466706 1078 ntBASIC6.45□□□□□ -1.38
MSX2P35548 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 AC117395.1-201ENST00000487390 403 ntBASIC6.45□□□□□ -1.38
MSX2P35548 RPL17P2-201ENST00000491913 451 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC112206.2-201ENST00000503106 557 ntTSL 4 BASIC6.45□□□□□ -1.38
MSX2P35548 AC023886.1-201ENST00000506057 685 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX2P35548 LINC01184-206ENST00000508878 968 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 AL117351.2-201ENST00000513571 157 ntBASIC6.45□□□□□ -1.38
MSX2P35548 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 AP001207.2-201ENST00000519490 539 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC018523.1-201ENST00000534211 512 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC068790.1-201ENST00000536166 355 ntBASIC6.45□□□□□ -1.38
MSX2P35548 NXPE2P1-201ENST00000543705 726 ntBASIC6.45□□□□□ -1.38
MSX2P35548 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC6.45□□□□□ -1.38
MSX2P35548 PTCSC3-201ENST00000556013 571 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 DPPA3P2-202ENST00000557188 1219 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX2P35548 DNM1P47-201ENST00000560757 334 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX2P35548 THSD4-AS1-204ENST00000566268 468 ntTSL 4 BASIC6.45□□□□□ -1.38
MSX2P35548 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 AC004232.1-201ENST00000571388 208 ntBASIC6.45□□□□□ -1.38
MSX2P35548 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC6.45□□□□□ -1.38
MSX2P35548 AP001496.3-201ENST00000580230 913 ntBASIC6.45□□□□□ -1.38
MSX2P35548 MIR3689C-201ENST00000581239 72 ntBASIC6.45□□□□□ -1.38
MSX2P35548 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC6.45□□□□□ -1.38
MSX2P35548 AC090425.2-201ENST00000608818 501 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AC243830.3-201ENST00000616810 376 ntBASIC6.45□□□□□ -1.38
MSX2P35548 AL049541.2-201ENST00000626377 555 ntBASIC6.45□□□□□ -1.38
MSX2P35548 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 LINC02034-201ENST00000635368 760 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 AL731556.1-201ENST00000394628 3711 ntBASIC6.45□□□□□ -1.38
MSX2P35548 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
MSX2P35548 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 AC092701.1-201ENST00000623627 1551 ntBASIC6.44□□□□□ -1.38
MSX2P35548 CASC19-238ENST00000641523 1558 ntBASIC6.44□□□□□ -1.38
MSX2P35548 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 RNA5SP301-201ENST00000362537 121 ntBASIC6.44□□□□□ -1.38
MSX2P35548 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 RN7SKP39-201ENST00000410773 322 ntBASIC6.44□□□□□ -1.38
MSX2P35548 MTND4LP17-201ENST00000414607 293 ntBASIC6.44□□□□□ -1.38
MSX2P35548 MTND4LP21-201ENST00000415303 295 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 RPSAP1-201ENST00000421328 880 ntBASIC6.44□□□□□ -1.38
MSX2P35548 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
MSX2P35548 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC6.44□□□□□ -1.38
MSX2P35548 RPL7P33-201ENST00000444159 742 ntBASIC6.44□□□□□ -1.38
MSX2P35548 RPSAP49-201ENST00000445182 886 ntBASIC6.44□□□□□ -1.38
MSX2P35548 HSD17B3-AS1-201ENST00000448857 1072 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX2P35548 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX2P35548 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX2P35548 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX2P35548 PRDX3P4-201ENST00000470828 747 ntBASIC6.44□□□□□ -1.38
MSX2P35548 RN7SL379P-201ENST00000479912 293 ntBASIC6.44□□□□□ -1.38
MSX2P35548 RN7SL382P-201ENST00000482631 282 ntBASIC6.44□□□□□ -1.38
MSX2P35548 MTCO3P35-201ENST00000485582 781 ntBASIC6.44□□□□□ -1.38
MSX2P35548 HMGB1P38-201ENST00000490557 577 ntBASIC6.44□□□□□ -1.38
MSX2P35548 AC127024.1-201ENST00000490847 418 ntBASIC6.44□□□□□ -1.38
MSX2P35548 RN7SL143P-201ENST00000496780 297 ntBASIC6.44□□□□□ -1.38
MSX2P35548 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.44□□□□□ -1.38
MSX2P35548 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms