Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC009831.5-201ENST00000624000 3189 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AL662795.2-201ENST00000624252 3706 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 DLD-205ENST00000440410 1993 ntTSL 2 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 OR52A1-201ENST00000328942 939 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 RNU4-81P-201ENST00000363561 144 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 FAUP2-201ENST00000394301 401 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 HSPD1P16-201ENST00000402302 394 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 MIR1231-201ENST00000408101 92 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 RPS21P8-201ENST00000413365 247 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 EIF4A1P13-201ENST00000415667 230 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC019205.1-201ENST00000421830 730 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 BX323845.2-201ENST00000458382 234 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 MYL6P4-201ENST00000477911 453 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 RPS23-208ENST00000512493 443 ntTSL 3 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AL132857.1-201ENST00000555180 708 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC096708.2-201ENST00000577676 512 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 SNORA70D-201ENST00000578836 135 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AL049829.3-202ENST00000604278 711 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AL158042.1-201ENST00000605338 460 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC080013.4-201ENST00000607624 649 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 OR7A19P-201ENST00000608051 733 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC063962.1-201ENST00000608199 521 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 FRG2MP-201ENST00000613317 856 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC123767.1-202ENST00000620407 817 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 SMIM11B-203ENST00000622934 1193 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 JAML-213ENST00000640745 951 ntTSL 5 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AP005139.1-201ENST00000580702 1647 ntBASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC7.95□□□□□ -1.14
CCDC39Q9UFE4 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC013488.1-201ENST00000526618 1838 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 RPS3AP5-201ENST00000389400 821 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 RNA5SP177-201ENST00000410122 107 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 ALDH7A1P4-201ENST00000412255 178 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AL713922.1-201ENST00000416477 747 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AL356320.2-201ENST00000417263 507 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 KIF4CP-201ENST00000422742 1279 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 UBE2D3P3-201ENST00000426992 425 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC019080.2-201ENST00000453859 394 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 RBMY2HP-201ENST00000457961 720 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 SNORA35.1-201ENST00000458908 128 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 WBP1LP1-201ENST00000460451 896 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AL928654.1-201ENST00000476081 354 ntBASIC7.94□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms