Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AL352984.2-202ENST00000613699 155 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 CXADRP3-202ENST00000617265 1100 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AC217777.1-201ENST00000570034 1471 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 LRRC37A15P-201ENST00000514785 1355 ntBASIC6.71□□□□□ -1.33
DKK3Q9UBP4 MTCO1P22-201ENST00000604619 1360 ntBASIC6.71□□□□□ -1.33
DKK3Q9UBP4 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
DKK3Q9UBP4 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 PPIAP24-201ENST00000328558 471 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 VIM2P-201ENST00000402383 1294 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AL929472.1-201ENST00000417484 429 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 OR5W1P-201ENST00000423705 938 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 CR848007.2-201ENST00000424918 787 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 RPL12P49-201ENST00000441100 121 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AL158053.1-201ENST00000441503 453 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 COL11A2P1-205ENST00000441798 676 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 MTND6P32-201ENST00000457611 483 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC026782.2-201ENST00000510845 636 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 PVT1-214ENST00000522875 922 ntTSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC011921.2-201ENST00000589465 152 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 LSM1P2-201ENST00000604911 322 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC114477.1-201ENST00000605097 605 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 GMCL1P2-201ENST00000605230 823 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC242628.1-201ENST00000606810 391 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AC093635.1-201ENST00000609028 555 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 OR1N1-202ENST00000619659 939 ntBASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
DKK3Q9UBP4 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC083837.1-201ENST00000565297 2994 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 RNU6-891P-201ENST00000384280 111 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 RPL12P23-201ENST00000405880 490 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 RN7SKP146-201ENST00000410242 334 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 RPL23AP18-201ENST00000416139 468 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 DPPA2P2-201ENST00000418220 897 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 RPL7AP14-201ENST00000424041 802 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AL590762.3-201ENST00000436372 640 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC074367.1-201ENST00000438685 1125 ntBASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms