Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC5.37□□□□□ -1.55
CDX1P47902 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CDX1P47902 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
CDX1P47902 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC5.37□□□□□ -1.55
CDX1P47902 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC5.37□□□□□ -1.55
CDX1P47902 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 AC027796.1-201ENST00000575593 512 ntBASIC5.37□□□□□ -1.55
CDX1P47902 CCL2-202ENST00000580907 736 ntTSL 2 BASIC5.37□□□□□ -1.55
CDX1P47902 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.37□□□□□ -1.55
CDX1P47902 AC005229.3-201ENST00000603438 323 ntBASIC5.37□□□□□ -1.55
CDX1P47902 BX322635.1-201ENST00000605804 496 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AC067838.1-201ENST00000606064 577 ntBASIC5.37□□□□□ -1.55
CDX1P47902 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.37□□□□□ -1.55
CDX1P47902 AL137000.1-201ENST00000610528 1244 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AC008833.1-201ENST00000611633 691 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AC026951.2-201ENST00000613847 241 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AC005899.6-201ENST00000620729 297 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AC104820.1-201ENST00000624183 307 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AL162377.2-201ENST00000624532 337 ntBASIC5.37□□□□□ -1.55
CDX1P47902 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 MBD5-221ENST00000637159 902 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CDX1P47902 AC011503.2-201ENST00000594230 1500 ntBASIC5.37□□□□□ -1.55
CDX1P47902 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 AC004656.1-201ENST00000568479 4951 ntBASIC5.36□□□□□ -1.55
CDX1P47902 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC5.36□□□□□ -1.55
CDX1P47902 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CDX1P47902 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.36□□□□□ -1.55
CDX1P47902 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.36□□□□□ -1.55
CDX1P47902 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
CDX1P47902 AC140479.2-201ENST00000421567 3130 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AC016745.2-201ENST00000608834 3443 ntBASIC5.36□□□□□ -1.55
CDX1P47902 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
CDX1P47902 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CDX1P47902 OR2M1P-201ENST00000318104 951 ntBASIC5.36□□□□□ -1.55
CDX1P47902 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CDX1P47902 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CDX1P47902 MIR7-1-201ENST00000384871 110 ntBASIC5.36□□□□□ -1.55
CDX1P47902 MIR551B-201ENST00000384984 96 ntBASIC5.36□□□□□ -1.55
CDX1P47902 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CDX1P47902 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.36□□□□□ -1.55
CDX1P47902 RN7SKP271-201ENST00000410528 320 ntBASIC5.36□□□□□ -1.55
CDX1P47902 RPL18AP14-201ENST00000417685 526 ntBASIC5.36□□□□□ -1.55
CDX1P47902 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.36□□□□□ -1.55
CDX1P47902 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC5.36□□□□□ -1.55
CDX1P47902 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 WDR82P2-201ENST00000444540 928 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC5.36□□□□□ -1.55
CDX1P47902 MTND3P4-201ENST00000453537 303 ntBASIC5.36□□□□□ -1.55
CDX1P47902 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.36□□□□□ -1.55
CDX1P47902 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 NMNAT1P3-201ENST00000457517 888 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 RPSAP24-201ENST00000461543 873 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AC090602.1-201ENST00000469695 252 ntBASIC5.36□□□□□ -1.55
CDX1P47902 RN7SL790P-201ENST00000474043 298 ntBASIC5.36□□□□□ -1.55
CDX1P47902 RN7SL655P-201ENST00000486087 298 ntBASIC5.36□□□□□ -1.55
CDX1P47902 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CDX1P47902 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.36□□□□□ -1.55
CDX1P47902 MTCYBP44-201ENST00000514835 823 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 AP001804.2-201ENST00000533932 910 ntBASIC5.36□□□□□ -1.55
CDX1P47902 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CDX1P47902 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC5.36□□□□□ -1.55
CDX1P47902 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC5.36□□□□□ -1.55
CDX1P47902 NXPE2P1-201ENST00000543705 726 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.36□□□□□ -1.55
CDX1P47902 HMGN1P26-201ENST00000558737 303 ntBASIC5.36□□□□□ -1.55
CDX1P47902 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC5.36□□□□□ -1.55
CDX1P47902 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC5.36□□□□□ -1.55
CDX1P47902 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 AC027281.1-201ENST00000574178 758 ntBASIC5.36□□□□□ -1.55
CDX1P47902 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CDX1P47902 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC5.36□□□□□ -1.55
CDX1P47902 DIMT1P1-201ENST00000603970 763 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AC111186.1-201ENST00000604684 130 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC5.36□□□□□ -1.55
CDX1P47902 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC5.36□□□□□ -1.55
CDX1P47902 5S_rRNA.23-201ENST00000612086 102 ntBASIC5.36□□□□□ -1.55
CDX1P47902 OR8G7P-201ENST00000616658 848 ntBASIC5.36□□□□□ -1.55
CDX1P47902 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CDX1P47902 Six3os1_1.1-201ENST00000620900 87 ntBASIC5.36□□□□□ -1.55
CDX1P47902 AL138693.1-201ENST00000622219 129 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms