Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SHMT2P34897 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SHMT2P34897 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
SHMT2P34897 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.18□□□□□ -1.42
SHMT2P34897 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SHMT2P34897 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SHMT2P34897 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.18□□□□□ -1.42
SHMT2P34897 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.18□□□□□ -1.42
SHMT2P34897 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.18□□□□□ -1.42
SHMT2P34897 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.17□□□□□ -1.42
SHMT2P34897 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.17□□□□□ -1.42
SHMT2P34897 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 AC090181.3-201ENST00000624777 1514 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.17□□□□□ -1.42
SHMT2P34897 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.17□□□□□ -1.42
SHMT2P34897 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.17□□□□□ -1.42
SHMT2P34897 AC099782.1-201ENST00000425889 474 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.17□□□□□ -1.42
SHMT2P34897 GTF2IP14-201ENST00000441415 586 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.17□□□□□ -1.42
SHMT2P34897 SNX18P26-201ENST00000458433 740 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 RN7SL552P-201ENST00000462094 276 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 RN7SL369P-201ENST00000477138 299 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC6.17□□□□□ -1.42
SHMT2P34897 RN7SKP183-201ENST00000517169 324 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.17□□□□□ -1.42
SHMT2P34897 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.17□□□□□ -1.42
SHMT2P34897 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.17□□□□□ -1.42
SHMT2P34897 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.17□□□□□ -1.42
SHMT2P34897 AC063952.1-203ENST00000634410 658 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 OR7E91P-202ENST00000642062 1198 ntBASIC6.17□□□□□ -1.42
SHMT2P34897 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHMT2P34897 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.16□□□□□ -1.42
SHMT2P34897 OR2W4P-201ENST00000406496 926 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 AL139805.1-201ENST00000407837 289 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 RNA5SP198-201ENST00000410376 127 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 U3.43-201ENST00000410734 213 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 TMA16P2-201ENST00000413187 601 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.16□□□□□ -1.42
SHMT2P34897 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC6.16□□□□□ -1.42
SHMT2P34897 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.16□□□□□ -1.42
SHMT2P34897 AC010086.1-201ENST00000437359 1052 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 AC009237.1-201ENST00000442127 744 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 CXCR2P1-202ENST00000443392 1074 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 TIMM8BP2-201ENST00000445940 251 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 RN7SL362P-201ENST00000494228 267 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 RN7SL649P-201ENST00000496974 275 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 AC010343.2-201ENST00000510162 224 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 KHDC1P1-201ENST00000511053 508 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.16□□□□□ -1.42
SHMT2P34897 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 AP003080.1-202ENST00000526526 915 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 AP001804.1-201ENST00000526868 919 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.16□□□□□ -1.42
SHMT2P34897 AC005632.2-201ENST00000564271 828 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.16□□□□□ -1.42
SHMT2P34897 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.16□□□□□ -1.42
SHMT2P34897 AC009779.8-202ENST00000607990 932 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 AL359091.2-201ENST00000609303 556 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 AL352984.2-201ENST00000611153 546 ntBASIC6.16□□□□□ -1.42
SHMT2P34897 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.16□□□□□ -1.42
SHMT2P34897 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.16□□□□□ -1.42
SHMT2P34897 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SHMT2P34897 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SHMT2P34897 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
SHMT2P34897 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
SHMT2P34897 AL157831.2-201ENST00000564681 3095 ntBASIC6.15□□□□□ -1.42
SHMT2P34897 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SHMT2P34897 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
SHMT2P34897 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.15□□□□□ -1.42
SHMT2P34897 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.15□□□□□ -1.42
SHMT2P34897 MIR188-201ENST00000385034 86 ntBASIC6.15□□□□□ -1.42
SHMT2P34897 AL360271.1-201ENST00000395679 510 ntBASIC6.15□□□□□ -1.42
SHMT2P34897 RN7SKP86-201ENST00000410454 332 ntBASIC6.15□□□□□ -1.42
SHMT2P34897 MTND2P12-201ENST00000417560 1252 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms