Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC097721.1-201ENST00000427150 1253 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC6.75□□□□□ -1.33
HDAC4P56524 AL034369.1-201ENST00000453808 477 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 RN7SL836P-201ENST00000476140 296 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC6.75□□□□□ -1.33
HDAC4P56524 AL133399.1-201ENST00000527476 298 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.75□□□□□ -1.33
HDAC4P56524 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
HDAC4P56524 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.75□□□□□ -1.33
HDAC4P56524 AL078623.1-201ENST00000602702 907 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 AC068726.1-201ENST00000610993 341 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 AP005212.4-201ENST00000614206 710 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 MIR6503-201ENST00000622884 86 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 AL355480.1-201ENST00000629041 99 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC6.75□□□□□ -1.33
HDAC4P56524 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 MIPEPP2-201ENST00000422560 1819 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.75□□□□□ -1.33
HDAC4P56524 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 OLMALINC-203ENST00000641087 3779 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 RPL31P11-201ENST00000426558 1558 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AL662795.2-201ENST00000624252 3706 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
HDAC4P56524 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.74□□□□□ -1.33
HDAC4P56524 AC011455.2-201ENST00000599320 3336 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
HDAC4P56524 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
HDAC4P56524 RNU1-84P-201ENST00000365447 164 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AL391419.1-201ENST00000398901 1275 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC6.74□□□□□ -1.33
HDAC4P56524 MRPS21P5-201ENST00000417885 231 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.74□□□□□ -1.33
HDAC4P56524 MED28P4-201ENST00000433137 572 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 UBE2V2P3-201ENST00000433562 437 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AC128677.1-201ENST00000436016 442 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC6.74□□□□□ -1.33
HDAC4P56524 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC6.74□□□□□ -1.33
HDAC4P56524 UBQLN1P1-207ENST00000441056 1169 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.74□□□□□ -1.33
HDAC4P56524 MGAT2P1-201ENST00000449718 797 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.74□□□□□ -1.33
HDAC4P56524 AC090589.1-201ENST00000473109 362 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 RN7SL502P-201ENST00000481857 290 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AC022206.1-201ENST00000495947 347 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AC018645.1-201ENST00000505003 109 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.74□□□□□ -1.33
HDAC4P56524 KCTD9P4-201ENST00000526766 1166 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC6.74□□□□□ -1.33
HDAC4P56524 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC6.74□□□□□ -1.33
HDAC4P56524 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC6.74□□□□□ -1.33
HDAC4P56524 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.74□□□□□ -1.33
HDAC4P56524 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.74□□□□□ -1.33
HDAC4P56524 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.74□□□□□ -1.33
HDAC4P56524 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC6.74□□□□□ -1.33
HDAC4P56524 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.74□□□□□ -1.33
HDAC4P56524 AC125494.2-201ENST00000602431 657 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AL583832.1-201ENST00000603227 784 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.74□□□□□ -1.33
HDAC4P56524 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.74□□□□□ -1.33
HDAC4P56524 CFTRP2-201ENST00000634304 199 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 AP000550.3-201ENST00000637734 379 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
HDAC4P56524 AC006213.6-201ENST00000623722 4179 ntBASIC6.74□□□□□ -1.33
HDAC4P56524 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.74□□□□□ -1.33
HDAC4P56524 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDAC4P56524 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.74□□□□□ -1.33
HDAC4P56524 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDAC4P56524 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
HDAC4P56524 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.73□□□□□ -1.33
HDAC4P56524 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDAC4P56524 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
HDAC4P56524 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HDAC4P56524 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.73□□□□□ -1.33
HDAC4P56524 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDAC4P56524 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HDAC4P56524 AC105749.1-201ENST00000631338 2008 ntBASIC6.73□□□□□ -1.33
HDAC4P56524 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
HDAC4P56524 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDAC4P56524 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDAC4P56524 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
HDAC4P56524 FAM32BP-201ENST00000344033 333 ntBASIC6.73□□□□□ -1.33
HDAC4P56524 STAG3L4-201ENST00000352103 530 ntBASIC6.73□□□□□ -1.33
HDAC4P56524 AC245036.1-201ENST00000391727 309 ntBASIC6.73□□□□□ -1.33
HDAC4P56524 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.73□□□□□ -1.33
HDAC4P56524 SETP9-201ENST00000423837 832 ntBASIC6.73□□□□□ -1.33
HDAC4P56524 FGF12-202ENST00000430714 603 ntTSL 2 BASIC6.73□□□□□ -1.33
HDAC4P56524 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.73□□□□□ -1.33
HDAC4P56524 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.73□□□□□ -1.33
HDAC4P56524 REG1CP-206ENST00000447469 496 ntBASIC6.73□□□□□ -1.33
HDAC4P56524 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms