Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MIR193BHG-214ENST00000641765 509 ntBASIC8.71□□□□□ -1.02
MSH6P52701 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC8.71□□□□□ -1.02
MSH6P52701 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
MSH6P52701 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC8.7□□□□□ -1.02
MSH6P52701 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC8.7□□□□□ -1.02
MSH6P52701 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC8.7□□□□□ -1.02
MSH6P52701 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC8.7□□□□□ -1.02
MSH6P52701 C4BPAP1-201ENST00000415474 1893 ntBASIC8.7□□□□□ -1.02
MSH6P52701 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 AC235565.1-201ENST00000456962 1325 ntBASIC8.7□□□□□ -1.02
MSH6P52701 AC117409.1-201ENST00000470499 1310 ntBASIC8.7□□□□□ -1.02
MSH6P52701 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 GAPDHP24-201ENST00000328713 983 ntBASIC8.7□□□□□ -1.02
MSH6P52701 RNU6-171P-201ENST00000384354 107 ntBASIC8.7□□□□□ -1.02
MSH6P52701 MIR585-201ENST00000384887 94 ntBASIC8.7□□□□□ -1.02
MSH6P52701 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC8.7□□□□□ -1.02
MSH6P52701 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC8.7□□□□□ -1.02
MSH6P52701 AC006455.6-201ENST00000426192 893 ntBASIC8.7□□□□□ -1.02
MSH6P52701 PPIAP10-201ENST00000438675 458 ntBASIC8.7□□□□□ -1.02
MSH6P52701 TRIM60P16-201ENST00000444048 694 ntBASIC8.7□□□□□ -1.02
MSH6P52701 AC073909.1-201ENST00000447112 999 ntBASIC8.7□□□□□ -1.02
MSH6P52701 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC8.7□□□□□ -1.02
MSH6P52701 AC006499.3-201ENST00000506077 748 ntBASIC8.7□□□□□ -1.02
MSH6P52701 DUTP7-201ENST00000507982 486 ntBASIC8.7□□□□□ -1.02
MSH6P52701 AC106800.2-201ENST00000514009 1103 ntBASIC8.7□□□□□ -1.02
MSH6P52701 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC8.7□□□□□ -1.02
MSH6P52701 EIF4A2P5-201ENST00000529914 499 ntBASIC8.7□□□□□ -1.02
MSH6P52701 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC8.7□□□□□ -1.02
MSH6P52701 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC8.7□□□□□ -1.02
MSH6P52701 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC8.7□□□□□ -1.02
MSH6P52701 RPL12P48-201ENST00000605620 304 ntBASIC8.7□□□□□ -1.02
MSH6P52701 MIR7159-201ENST00000620587 66 ntBASIC8.7□□□□□ -1.02
MSH6P52701 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
MSH6P52701 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH6P52701 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 CCNT2P1-201ENST00000423082 1315 ntBASIC8.69□□□□□ -1.02
MSH6P52701 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC8.69□□□□□ -1.02
MSH6P52701 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 AL359976.1-201ENST00000418655 3528 ntBASIC8.69□□□□□ -1.02
MSH6P52701 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
MSH6P52701 RNU1-49P-201ENST00000363468 159 ntBASIC8.69□□□□□ -1.02
MSH6P52701 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC8.69□□□□□ -1.02
MSH6P52701 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 RPL35AP31-201ENST00000418340 337 ntBASIC8.69□□□□□ -1.02
MSH6P52701 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC8.69□□□□□ -1.02
MSH6P52701 AC002504.1-201ENST00000438281 691 ntBASIC8.69□□□□□ -1.02
MSH6P52701 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 AL512593.1-201ENST00000444758 779 ntBASIC8.69□□□□□ -1.02
MSH6P52701 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC8.69□□□□□ -1.02
MSH6P52701 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC8.69□□□□□ -1.02
MSH6P52701 AC108693.1-201ENST00000496068 432 ntBASIC8.69□□□□□ -1.02
MSH6P52701 APPL2-203ENST00000546731 684 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH6P52701 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC8.69□□□□□ -1.02
MSH6P52701 AP001496.3-201ENST00000580230 913 ntBASIC8.69□□□□□ -1.02
MSH6P52701 MIR7155-201ENST00000615925 56 ntBASIC8.69□□□□□ -1.02
MSH6P52701 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC8.69□□□□□ -1.02
MSH6P52701 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 TANK-205ENST00000405852 2155 ntTSL 5 BASIC8.69□□□□□ -1.02
MSH6P52701 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH6P52701 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH6P52701 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC8.68□□□□□ -1.02
MSH6P52701 AL590763.1-201ENST00000398297 1545 ntBASIC8.68□□□□□ -1.02
MSH6P52701 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
MSH6P52701 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH6P52701 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
MSH6P52701 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 139.1 ms