Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXA1P49639 AC079753.1-201ENST00000623243 3868 ntBASIC5.43□□□□□ -1.54
HOXA1P49639 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXA1P49639 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
HOXA1P49639 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC114876.1-201ENST00000490962 1366 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA1P49639 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 AL132656.3-201ENST00000606384 1595 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 DLD-205ENST00000440410 1993 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA1P49639 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HOXA1P49639 RNA5SP453-201ENST00000362503 119 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 Y_RNA.110-201ENST00000363220 99 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 SNORA5.1-201ENST00000384275 131 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 RNA5SP53-201ENST00000391299 120 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 ZBTB8OSP2-201ENST00000423890 504 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 AC007365.2-201ENST00000428806 458 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC239367.3-201ENST00000428996 814 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC018804.1-201ENST00000430381 618 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 FTLP17-201ENST00000432567 525 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 MTND4P15-201ENST00000437913 1033 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.42□□□□□ -1.54
HOXA1P49639 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 AC016396.1-201ENST00000440189 328 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 SNX18P9-201ENST00000440580 835 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC093581.1-204ENST00000442606 390 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 AL161722.1-201ENST00000446972 1032 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 SULT1D1P-201ENST00000458020 882 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC083806.1-201ENST00000468934 316 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC093827.1-201ENST00000480094 861 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 PDPN-205ENST00000487038 607 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA1P49639 RPL23AP80-201ENST00000495605 424 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 RN7SL445P-201ENST00000495609 293 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 AC106800.3-201ENST00000511389 308 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 KLRD1-210ENST00000543777 789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 VDAC2P2-201ENST00000544463 901 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AL109628.1-201ENST00000556877 366 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC011270.1-201ENST00000558606 583 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 NQO1-205ENST00000561500 891 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 RN7SL697P-201ENST00000582484 299 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AL049829.3-202ENST00000604278 711 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AP000240.1-201ENST00000609910 452 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 AC012560.1-201ENST00000634930 459 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA1P49639 AC026108.1-201ENST00000635444 547 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AL356585.10-201ENST00000641883 123 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA1P49639 AC144833.1-201ENST00000567953 4089 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 AC079248.1-201ENST00000427568 1546 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA1P49639 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA1P49639 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 ATP5BP1-201ENST00000411980 1574 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA1P49639 AC119674.1-213ENST00000641177 1386 ntBASIC5.42□□□□□ -1.54
HOXA1P49639 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
HOXA1P49639 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.41□□□□□ -1.54
HOXA1P49639 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA1P49639 AC096992.2-201ENST00000609553 1684 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 AL121839.2-201ENST00000565058 6943 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 AL138847.1-201ENST00000258651 546 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 VNN3-201ENST00000275223 1260 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms