Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC062022.1-201ENST00000451026 1684 ntBASIC5.38□□□□□ -1.55
CDX1P47902 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 CA10-204ENST00000570565 2276 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.38□□□□□ -1.55
CDX1P47902 RNA5SP152-201ENST00000365184 110 ntBASIC5.38□□□□□ -1.55
CDX1P47902 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 AL360271.1-201ENST00000395679 510 ntBASIC5.38□□□□□ -1.55
CDX1P47902 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 AL079341.1-201ENST00000404701 1207 ntBASIC5.38□□□□□ -1.55
CDX1P47902 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.38□□□□□ -1.55
CDX1P47902 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC5.38□□□□□ -1.55
CDX1P47902 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.38□□□□□ -1.55
CDX1P47902 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 snoU13.29-201ENST00000459370 104 ntBASIC5.38□□□□□ -1.55
CDX1P47902 RN7SL390P-201ENST00000470634 284 ntBASIC5.38□□□□□ -1.55
CDX1P47902 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 RN7SL350P-201ENST00000492591 299 ntBASIC5.38□□□□□ -1.55
CDX1P47902 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.38□□□□□ -1.55
CDX1P47902 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.38□□□□□ -1.55
CDX1P47902 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.38□□□□□ -1.55
CDX1P47902 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
CDX1P47902 AC117525.1-201ENST00000515228 503 ntBASIC5.38□□□□□ -1.55
CDX1P47902 MINOS1P4-201ENST00000515470 318 ntBASIC5.38□□□□□ -1.55
CDX1P47902 CASC11-203ENST00000519071 791 ntTSL 3 BASIC5.38□□□□□ -1.55
CDX1P47902 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.38□□□□□ -1.55
CDX1P47902 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.38□□□□□ -1.55
CDX1P47902 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 MIR4312-201ENST00000579909 76 ntBASIC5.38□□□□□ -1.55
CDX1P47902 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 AC093388.1-201ENST00000609166 430 ntBASIC5.38□□□□□ -1.55
CDX1P47902 AL136097.3-201ENST00000611097 505 ntBASIC5.38□□□□□ -1.55
CDX1P47902 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.38□□□□□ -1.55
CDX1P47902 TCL6_3.1-201ENST00000619064 137 ntBASIC5.38□□□□□ -1.55
CDX1P47902 AP000550.3-201ENST00000637734 379 ntBASIC5.38□□□□□ -1.55
CDX1P47902 AC011471.4-201ENST00000638271 216 ntBASIC5.38□□□□□ -1.55
CDX1P47902 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
CDX1P47902 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.38□□□□□ -1.55
CDX1P47902 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.38□□□□□ -1.55
CDX1P47902 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CDX1P47902 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.38□□□□□ -1.55
CDX1P47902 UGT2B24P-201ENST00000514441 1597 ntBASIC5.38□□□□□ -1.55
CDX1P47902 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC5.37□□□□□ -1.55
CDX1P47902 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CDX1P47902 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 MIR365B-201ENST00000362317 111 ntBASIC5.37□□□□□ -1.55
CDX1P47902 RNU6-618P-201ENST00000363518 112 ntBASIC5.37□□□□□ -1.55
CDX1P47902 RN7SKP118-201ENST00000364331 330 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 AL353625.1-202ENST00000366273 571 ntBASIC5.37□□□□□ -1.55
CDX1P47902 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC5.37□□□□□ -1.55
CDX1P47902 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC5.37□□□□□ -1.55
CDX1P47902 LDHAP5-201ENST00000394996 622 ntBASIC5.37□□□□□ -1.55
CDX1P47902 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 AC116036.1-201ENST00000412199 367 ntBASIC5.37□□□□□ -1.55
CDX1P47902 RPSAP60-201ENST00000415403 880 ntBASIC5.37□□□□□ -1.55
CDX1P47902 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 AC009506.2-201ENST00000420635 840 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC5.37□□□□□ -1.55
CDX1P47902 SETP9-201ENST00000423837 832 ntBASIC5.37□□□□□ -1.55
CDX1P47902 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC5.37□□□□□ -1.55
CDX1P47902 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 RPL5P2-201ENST00000429598 854 ntBASIC5.37□□□□□ -1.55
CDX1P47902 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CDX1P47902 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC5.37□□□□□ -1.55
CDX1P47902 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC5.37□□□□□ -1.55
CDX1P47902 CEACAMP11-201ENST00000455211 583 ntBASIC5.37□□□□□ -1.55
CDX1P47902 RN7SL379P-201ENST00000479912 293 ntBASIC5.37□□□□□ -1.55
CDX1P47902 RPL23AP80-201ENST00000495605 424 ntBASIC5.37□□□□□ -1.55
CDX1P47902 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.37□□□□□ -1.55
CDX1P47902 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC5.37□□□□□ -1.55
CDX1P47902 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms