Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SNORD115-48-201ENST00000364764 76 ntBASIC6.48□□□□□ -1.37
MSX2P35548 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX2P35548 ARMCX7P-201ENST00000372828 562 ntBASIC6.48□□□□□ -1.37
MSX2P35548 IGKV3D-11-201ENST00000390277 444 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
MSX2P35548 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
MSX2P35548 ATP5F1P2-201ENST00000398143 760 ntBASIC6.48□□□□□ -1.37
MSX2P35548 RPS21P8-201ENST00000413365 247 ntBASIC6.48□□□□□ -1.37
MSX2P35548 MTATP6P20-201ENST00000414147 562 ntBASIC6.48□□□□□ -1.37
MSX2P35548 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX2P35548 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX2P35548 AC017104.2-201ENST00000417000 321 ntBASIC6.48□□□□□ -1.37
MSX2P35548 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.48□□□□□ -1.37
MSX2P35548 ETF1P1-206ENST00000427296 984 ntBASIC6.48□□□□□ -1.37
MSX2P35548 AC009299.1-201ENST00000429684 717 ntBASIC6.48□□□□□ -1.37
MSX2P35548 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX2P35548 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX2P35548 AC010468.1-201ENST00000461022 817 ntBASIC6.48□□□□□ -1.37
MSX2P35548 RPL32P14-201ENST00000463196 378 ntBASIC6.48□□□□□ -1.37
MSX2P35548 AC083806.1-201ENST00000468934 316 ntBASIC6.48□□□□□ -1.37
MSX2P35548 TRBV8-1-201ENST00000481590 279 ntBASIC6.48□□□□□ -1.37
MSX2P35548 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX2P35548 SNORA58-201ENST00000505219 137 ntBASIC6.48□□□□□ -1.37
MSX2P35548 AC023794.3-204ENST00000510754 236 ntBASIC6.48□□□□□ -1.37
MSX2P35548 RNU6-311P-201ENST00000516224 102 ntBASIC6.48□□□□□ -1.37
MSX2P35548 RNU6-943P-201ENST00000516960 98 ntBASIC6.48□□□□□ -1.37
MSX2P35548 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.48□□□□□ -1.37
MSX2P35548 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX2P35548 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX2P35548 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
MSX2P35548 PIGPP4-201ENST00000584447 307 ntBASIC6.48□□□□□ -1.37
MSX2P35548 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX2P35548 AL606834.3-201ENST00000602615 496 ntBASIC6.48□□□□□ -1.37
MSX2P35548 AL160237.3-201ENST00000604114 1013 ntBASIC6.48□□□□□ -1.37
MSX2P35548 AC091193.1-201ENST00000604640 448 ntBASIC6.48□□□□□ -1.37
MSX2P35548 AC138904.2-201ENST00000614412 107 ntBASIC6.48□□□□□ -1.37
MSX2P35548 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 AL590410.1-201ENST00000617925 333 ntBASIC6.48□□□□□ -1.37
MSX2P35548 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX2P35548 AC078883.4-201ENST00000623218 367 ntBASIC6.48□□□□□ -1.37
MSX2P35548 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
MSX2P35548 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX2P35548 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 LRP12-201ENST00000276654 4112 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 DDX10P2-201ENST00000417796 2614 ntBASIC6.47□□□□□ -1.37
MSX2P35548 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 CDY19P-201ENST00000411668 1613 ntBASIC6.47□□□□□ -1.37
MSX2P35548 CDY18P-201ENST00000438294 1609 ntBASIC6.47□□□□□ -1.37
MSX2P35548 MFSD8-256ENST00000641949 1640 ntBASIC6.47□□□□□ -1.37
MSX2P35548 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.47□□□□□ -1.37
MSX2P35548 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 AC009135.2-201ENST00000624136 1768 ntBASIC6.47□□□□□ -1.37
MSX2P35548 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC6.47□□□□□ -1.37
MSX2P35548 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 RNA5SP396-201ENST00000364834 120 ntBASIC6.47□□□□□ -1.37
MSX2P35548 CD2-201ENST00000369477 478 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX2P35548 SNORD116-8-201ENST00000384365 95 ntBASIC6.47□□□□□ -1.37
MSX2P35548 ZNF602P-201ENST00000405929 924 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX2P35548 AL353611.1-201ENST00000417054 462 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 TEX41-203ENST00000420472 765 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX2P35548 AL158070.1-201ENST00000421614 631 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX2P35548 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX2P35548 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC6.47□□□□□ -1.37
MSX2P35548 ZNF965P-201ENST00000432501 817 ntBASIC6.47□□□□□ -1.37
MSX2P35548 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.47□□□□□ -1.37
MSX2P35548 Z73417.1-201ENST00000447373 778 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC092685.1-201ENST00000447960 1243 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AL031313.1-201ENST00000448435 256 ntBASIC6.47□□□□□ -1.37
MSX2P35548 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX2P35548 PABPC1P10-201ENST00000464731 381 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX2P35548 AC004263.1-201ENST00000479327 332 ntBASIC6.47□□□□□ -1.37
MSX2P35548 DEFB109A-201ENST00000482450 265 ntBASIC6.47□□□□□ -1.37
MSX2P35548 RN7SL775P-201ENST00000498361 336 ntBASIC6.47□□□□□ -1.37
MSX2P35548 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 AC010486.3-201ENST00000511602 785 ntBASIC6.47□□□□□ -1.37
MSX2P35548 RNU6-1334P-201ENST00000516032 105 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC103833.1-201ENST00000517442 172 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX2P35548 KCTD9P4-201ENST00000526766 1166 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX2P35548 AP001372.3-201ENST00000530510 609 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX2P35548 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms