Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 VN1R53P-201ENST00000429536 957 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 GAPDHP19-201ENST00000431768 1005 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 UBBP5-201ENST00000446970 266 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 SNX18P26-201ENST00000458433 740 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 RN7SL393P-201ENST00000463588 296 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC015524.1-201ENST00000491585 472 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 RN7SKP196-201ENST00000516267 345 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DMBP28068 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC026956.1-201ENST00000558741 396 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC138207.8-204ENST00000579588 527 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 MIR212-201ENST00000586026 110 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 RPL29P33-201ENST00000587474 316 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AL583832.1-201ENST00000603227 784 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC012175.1-201ENST00000603755 531 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC019257.2-201ENST00000605539 497 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC024589.2-201ENST00000605642 1294 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 AL008723.3-201ENST00000608926 449 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DMBP28068 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DMBP28068 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.64
HLA-DMBP28068 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
HLA-DMBP28068 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.64
HLA-DMBP28068 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC4.84□□□□□ -1.64
HLA-DMBP28068 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
HLA-DMBP28068 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DMBP28068 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC005725.1-201ENST00000577346 2607 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 FANCD2P2-201ENST00000437591 1400 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC011455.2-201ENST00000599320 3336 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 EEF1A1P9-201ENST00000514975 1383 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC010894.1-201ENST00000313760 361 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DMBP28068 RNU1-5P-201ENST00000362684 144 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 SNORD35A-201ENST00000363389 86 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 RNA5SP478-201ENST00000364657 115 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AL360271.1-201ENST00000395679 510 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DMBP28068 FDPSP5-201ENST00000399474 1057 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 RN7SKP146-201ENST00000410242 334 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 RN7SKP161-201ENST00000411110 305 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 CYP4F30P-202ENST00000420048 405 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 FAM183DP-201ENST00000421987 399 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 RPL7AP14-201ENST00000424041 802 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 RPL34P27-201ENST00000428810 349 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC092106.2-201ENST00000436597 487 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC092601.1-201ENST00000444526 383 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC103563.5-201ENST00000455643 364 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 IGKV1D-22-201ENST00000518953 324 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 OR9G2P-201ENST00000533326 880 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DMBP28068 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC005519.1-201ENST00000554490 601 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 OR4H6P-201ENST00000563771 921 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC090616.1-201ENST00000583895 447 ntBASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC4.83□□□□□ -1.64
HLA-DMBP28068 MIR6889-201ENST00000613185 59 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms