Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 MCF2L2-203ENST00000447025 2394 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 SPATA31B1P-201ENST00000434692 4016 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 VDAC1P2-201ENST00000423609 850 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AC064862.4-201ENST00000442180 334 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AC095057.1-201ENST00000507583 168 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 IGLV3-6-201ENST00000523937 250 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AL591167.1-201ENST00000607321 456 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 MIR6793-201ENST00000612376 63 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AL162456.1-201ENST00000634535 2006 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 AC007342.5-201ENST00000571340 2142 ntBASIC11.97□□□□□ -0.49
SHROOM4Q9ULL8 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 AL355433.1-201ENST00000422804 300 ntBASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 AC002486.2-201ENST00000447806 590 ntBASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 CR383658.1-201ENST00000514609 734 ntBASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 IGKV2-18-201ENST00000522607 343 ntBASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 USP40-202ENST00000409945 1946 ntTSL 2 BASIC11.96□□□□□ -0.49
SHROOM4Q9ULL8 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 AC125238.2-201ENST00000430003 1440 ntBASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
SHROOM4Q9ULL8 RN7SKP121-201ENST00000410842 305 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 DEFA9P-201ENST00000433042 285 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 SUMO2P3-201ENST00000438311 288 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 YWHABP1-201ENST00000445359 727 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AC005077.1-201ENST00000449226 375 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AL139156.3-201ENST00000454802 394 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 RNA5SP34-201ENST00000516887 130 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 UG0898H09-202ENST00000623646 7040 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 SNORD16-201ENST00000362803 99 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AC068138.1-201ENST00000412635 217 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 ACA64.1-201ENST00000459171 127 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 RPSAP37-201ENST00000470913 821 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 PFN1P6-201ENST00000476786 399 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 RN7SL714P-201ENST00000487050 298 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 ZNF322P1-201ENST00000568013 1209 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AC090616.1-201ENST00000583895 447 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AC025171.4-201ENST00000607250 1047 ntBASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC11.95□□□□□ -0.5
SHROOM4Q9ULL8 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 COG2-209ENST00000534989 2963 ntTSL 2 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 159.6 ms