Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC003989.1-201ENST00000434569 565 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 CLNS1AP1-201ENST00000435954 682 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDAC4P56524 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.77□□□□□ -1.33
HDAC4P56524 CCNJP2-201ENST00000457810 1163 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 RPS4XP17-201ENST00000479057 754 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 AP000926.3-201ENST00000497201 299 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
HDAC4P56524 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDAC4P56524 AC131392.1-201ENST00000506490 633 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 AC093664.1-201ENST00000511779 289 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.77□□□□□ -1.33
HDAC4P56524 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDAC4P56524 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC6.77□□□□□ -1.33
HDAC4P56524 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.77□□□□□ -1.33
HDAC4P56524 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.77□□□□□ -1.33
HDAC4P56524 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC6.77□□□□□ -1.33
HDAC4P56524 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC6.77□□□□□ -1.33
HDAC4P56524 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.77□□□□□ -1.33
HDAC4P56524 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC6.77□□□□□ -1.33
HDAC4P56524 MIR6885-201ENST00000612241 66 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 AC020658.4-201ENST00000613987 684 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 AC135068.11-201ENST00000636378 921 ntBASIC6.77□□□□□ -1.33
HDAC4P56524 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
HDAC4P56524 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDAC4P56524 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDAC4P56524 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDAC4P56524 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.77□□□□□ -1.33
HDAC4P56524 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.77□□□□□ -1.33
HDAC4P56524 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.77□□□□□ -1.33
HDAC4P56524 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDAC4P56524 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.77□□□□□ -1.33
HDAC4P56524 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDAC4P56524 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.77□□□□□ -1.33
HDAC4P56524 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.76□□□□□ -1.33
HDAC4P56524 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.76□□□□□ -1.33
HDAC4P56524 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
HDAC4P56524 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
HDAC4P56524 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
HDAC4P56524 MIR621-201ENST00000384919 96 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 SNORD94-201ENST00000386037 137 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 RAB5CP1-201ENST00000395972 580 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 AL050335.1-201ENST00000396909 869 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 RANP7-201ENST00000418085 644 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
HDAC4P56524 AL451136.1-201ENST00000435399 325 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC6.76□□□□□ -1.33
HDAC4P56524 H3F3AP3-201ENST00000497682 407 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.76□□□□□ -1.33
HDAC4P56524 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.76□□□□□ -1.33
HDAC4P56524 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC6.76□□□□□ -1.33
HDAC4P56524 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.76□□□□□ -1.33
HDAC4P56524 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.76□□□□□ -1.33
HDAC4P56524 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
HDAC4P56524 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.76□□□□□ -1.33
HDAC4P56524 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.76□□□□□ -1.33
HDAC4P56524 AL121579.2-201ENST00000555466 590 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 AC133552.4-201ENST00000576103 676 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 AC024267.2-201ENST00000582737 417 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.76□□□□□ -1.33
HDAC4P56524 AC019257.2-201ENST00000605539 497 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 AC022960.2-201ENST00000616300 666 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 AC211486.4-201ENST00000621495 113 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.76□□□□□ -1.33
HDAC4P56524 CLUHP10-201ENST00000631979 980 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.76□□□□□ -1.33
HDAC4P56524 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 AC010401.2-201ENST00000575137 4934 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDAC4P56524 SAGE3P-201ENST00000619800 1635 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 AC005702.3-201ENST00000585345 1447 ntBASIC6.76□□□□□ -1.33
HDAC4P56524 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
HDAC4P56524 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
HDAC4P56524 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.75□□□□□ -1.33
HDAC4P56524 AC007342.9-201ENST00000623877 1385 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.75□□□□□ -1.33
HDAC4P56524 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
HDAC4P56524 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 RNA5SP85-201ENST00000365378 119 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC6.75□□□□□ -1.33
HDAC4P56524 AC240504.1-201ENST00000395709 845 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.75□□□□□ -1.33
HDAC4P56524 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.75□□□□□ -1.33
HDAC4P56524 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDAC4P56524 RPL7AP14-201ENST00000424041 802 ntBASIC6.75□□□□□ -1.33
HDAC4P56524 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms