Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC6.13□□□□□ -1.43
PKNOX1P55347 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AC139713.1-202ENST00000512366 460 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AL133399.1-201ENST00000527476 298 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.13□□□□□ -1.43
PKNOX1P55347 RPA2P3-201ENST00000533268 770 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.13□□□□□ -1.43
PKNOX1P55347 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.13□□□□□ -1.43
PKNOX1P55347 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC6.13□□□□□ -1.43
PKNOX1P55347 OR4C49P-201ENST00000563891 900 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 AC133552.4-201ENST00000576103 676 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.13□□□□□ -1.43
PKNOX1P55347 OR7E19P-202ENST00000589942 844 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC6.13□□□□□ -1.43
PKNOX1P55347 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.13□□□□□ -1.43
PKNOX1P55347 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AC073046.2-201ENST00000604756 527 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AC006924.1-201ENST00000610750 559 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
PKNOX1P55347 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 AL359976.1-201ENST00000418655 3528 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 AC096921.2-201ENST00000561507 1916 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
PKNOX1P55347 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
PKNOX1P55347 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 OR51M1-201ENST00000328611 1058 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
PKNOX1P55347 KRTAP19-6-201ENST00000334046 330 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
PKNOX1P55347 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 GNG5P2-201ENST00000372054 207 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 RPL23AP17-201ENST00000401064 499 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 RN7SKP151-201ENST00000410230 316 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.12□□□□□ -1.43
PKNOX1P55347 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 RN7SL714P-201ENST00000487050 298 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.12□□□□□ -1.43
PKNOX1P55347 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.12□□□□□ -1.43
PKNOX1P55347 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.12□□□□□ -1.43
PKNOX1P55347 AC018645.1-201ENST00000505003 109 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.12□□□□□ -1.43
PKNOX1P55347 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.12□□□□□ -1.43
PKNOX1P55347 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.12□□□□□ -1.43
PKNOX1P55347 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.12□□□□□ -1.43
PKNOX1P55347 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
PKNOX1P55347 AL589863.1-201ENST00000595383 631 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 OR7A8P-201ENST00000595427 913 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 AC092070.2-203ENST00000598377 3644 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 AL078624.2-201ENST00000605063 554 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.12□□□□□ -1.43
PKNOX1P55347 AC003992.1-201ENST00000635364 557 ntBASIC6.12□□□□□ -1.43
PKNOX1P55347 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
PKNOX1P55347 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 AL136984.1-201ENST00000607611 1893 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.11□□□□□ -1.43
PKNOX1P55347 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 BX284613.1-201ENST00000452221 1641 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.11□□□□□ -1.43
PKNOX1P55347 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
PKNOX1P55347 MIR27A-201ENST00000385073 78 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
PKNOX1P55347 RN7SKP221-201ENST00000410420 301 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 RN7SKP205-201ENST00000410999 307 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 AC092651.1-201ENST00000426110 312 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms