Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.36□□□□□ -1.39
MSH3P20585 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC6.36□□□□□ -1.39
MSH3P20585 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.36□□□□□ -1.39
MSH3P20585 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.36□□□□□ -1.39
MSH3P20585 AC012368.3-201ENST00000604190 219 ntBASIC6.36□□□□□ -1.39
MSH3P20585 NDUFB9P1-201ENST00000604683 510 ntBASIC6.36□□□□□ -1.39
MSH3P20585 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.36□□□□□ -1.39
MSH3P20585 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 TMCC1P1-201ENST00000518897 1980 ntBASIC6.36□□□□□ -1.39
MSH3P20585 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 USP9YP3-201ENST00000434481 1766 ntBASIC6.36□□□□□ -1.39
MSH3P20585 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.36□□□□□ -1.39
MSH3P20585 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.36□□□□□ -1.39
MSH3P20585 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 AP003486.1-201ENST00000525716 3994 ntBASIC6.35□□□□□ -1.39
MSH3P20585 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.35□□□□□ -1.39
MSH3P20585 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.35□□□□□ -1.39
MSH3P20585 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 AC105235.1-201ENST00000623208 1816 ntBASIC6.35□□□□□ -1.39
MSH3P20585 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 SNORD8-201ENST00000363915 110 ntBASIC6.35□□□□□ -1.39
MSH3P20585 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 PRELID1P1-201ENST00000403549 660 ntBASIC6.35□□□□□ -1.39
MSH3P20585 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.35□□□□□ -1.39
MSH3P20585 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.35□□□□□ -1.39
MSH3P20585 SMARCE1P1-201ENST00000417747 1186 ntBASIC6.35□□□□□ -1.39
MSH3P20585 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.35□□□□□ -1.39
MSH3P20585 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.35□□□□□ -1.39
MSH3P20585 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.35□□□□□ -1.39
MSH3P20585 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.35□□□□□ -1.39
MSH3P20585 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.35□□□□□ -1.39
MSH3P20585 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.35□□□□□ -1.39
MSH3P20585 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC6.35□□□□□ -1.39
MSH3P20585 RNA5SP418-201ENST00000515951 117 ntBASIC6.35□□□□□ -1.39
MSH3P20585 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.35□□□□□ -1.39
MSH3P20585 TPRX1P1-201ENST00000557620 319 ntBASIC6.35□□□□□ -1.39
MSH3P20585 AC063977.7-201ENST00000594454 337 ntBASIC6.35□□□□□ -1.39
MSH3P20585 AL589765.6-201ENST00000601909 549 ntBASIC6.35□□□□□ -1.39
MSH3P20585 AC011891.2-201ENST00000604949 397 ntBASIC6.35□□□□□ -1.39
MSH3P20585 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.35□□□□□ -1.39
MSH3P20585 AC244100.4-201ENST00000617747 388 ntBASIC6.35□□□□□ -1.39
MSH3P20585 AC006511.3-201ENST00000624929 1783 ntBASIC6.35□□□□□ -1.39
MSH3P20585 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.35□□□□□ -1.39
MSH3P20585 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.35□□□□□ -1.39
MSH3P20585 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.35□□□□□ -1.39
MSH3P20585 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSH3P20585 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC6.35□□□□□ -1.39
MSH3P20585 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.35□□□□□ -1.39
MSH3P20585 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.35□□□□□ -1.39
MSH3P20585 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.34□□□□□ -1.39
MSH3P20585 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
MSH3P20585 AL353743.3-201ENST00000442109 1468 ntBASIC6.34□□□□□ -1.39
MSH3P20585 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC6.34□□□□□ -1.39
MSH3P20585 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.34□□□□□ -1.39
MSH3P20585 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
MSH3P20585 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.34□□□□□ -1.39
MSH3P20585 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 TTC41P-205ENST00000551270 3963 ntBASIC6.34□□□□□ -1.39
MSH3P20585 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.34□□□□□ -1.39
MSH3P20585 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
MSH3P20585 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 AC003045.1-201ENST00000398779 713 ntBASIC6.34□□□□□ -1.39
MSH3P20585 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.34□□□□□ -1.39
MSH3P20585 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms