Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 AC009135.2-201ENST00000624136 1768 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 OR7A2P-201ENST00000304105 930 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC5.3□□□□□ -1.56
SDCBPO00560 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.3□□□□□ -1.56
SDCBPO00560 RPL7P58-201ENST00000402913 758 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 RPL12P23-201ENST00000405880 490 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 OR2W4P-201ENST00000406496 926 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.3□□□□□ -1.56
SDCBPO00560 NPM1P23-201ENST00000440193 849 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 OR9A1P-202ENST00000484361 945 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 AC018639.1-201ENST00000492994 442 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC5.3□□□□□ -1.56
SDCBPO00560 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.3□□□□□ -1.56
SDCBPO00560 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.3□□□□□ -1.56
SDCBPO00560 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.3□□□□□ -1.56
SDCBPO00560 RNA5SP400-201ENST00000517155 111 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.3□□□□□ -1.56
SDCBPO00560 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC5.3□□□□□ -1.56
SDCBPO00560 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC5.3□□□□□ -1.56
SDCBPO00560 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC5.3□□□□□ -1.56
SDCBPO00560 AC026956.1-201ENST00000558741 396 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 NIFKP4-201ENST00000567275 1192 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.3□□□□□ -1.56
SDCBPO00560 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 GLYATL1P2-202ENST00000588046 902 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.3□□□□□ -1.56
SDCBPO00560 AC036176.3-201ENST00000602456 418 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC5.3□□□□□ -1.56
SDCBPO00560 AL352984.2-201ENST00000611153 546 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 AL352984.2-202ENST00000613699 155 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 MIR6070-201ENST00000613967 103 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC5.3□□□□□ -1.56
SDCBPO00560 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 AC096921.2-201ENST00000561507 1916 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SDCBPO00560 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SDCBPO00560 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SDCBPO00560 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SDCBPO00560 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.29□□□□□ -1.56
SDCBPO00560 MIR1266-201ENST00000408125 84 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.29□□□□□ -1.56
SDCBPO00560 RN7SKP151-201ENST00000410230 316 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC006509.1-201ENST00000420788 634 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC5.29□□□□□ -1.56
SDCBPO00560 AL157884.1-201ENST00000424561 454 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.29□□□□□ -1.56
SDCBPO00560 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC234771.4-201ENST00000441416 730 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 DNAJC19P5-201ENST00000443295 316 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.29□□□□□ -1.56
SDCBPO00560 RPL7L1P3-201ENST00000455249 689 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC122714.1-201ENST00000502510 459 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
SDCBPO00560 COX6B1P4-201ENST00000519826 484 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC5.29□□□□□ -1.56
SDCBPO00560 AP003080.1-202ENST00000526526 915 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 RPL3P13-201ENST00000550415 216 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 AC023968.1-201ENST00000560719 475 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.29□□□□□ -1.56
SDCBPO00560 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC004805.3-201ENST00000603178 310 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC5.29□□□□□ -1.56
SDCBPO00560 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC5.29□□□□□ -1.56
SDCBPO00560 AL138960.1-201ENST00000613838 513 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 CLUHP10-201ENST00000631979 980 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SDCBPO00560 AC005702.3-201ENST00000585345 1447 ntBASIC5.29□□□□□ -1.56
SDCBPO00560 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.29□□□□□ -1.56
SDCBPO00560 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SDCBPO00560 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms