Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR193BHG-210ENST00000641327 515 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC110716.2-201ENST00000563865 3945 ntBASIC6.12□□□□□ -1.43
CCDC140Q96MF4 TM2D2-203ENST00000456845 3295 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 APP-209ENST00000440126 2846 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC140Q96MF4 AC009318.1-201ENST00000553105 2380 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 UNC79-201ENST00000256339 8400 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC093311.1-201ENST00000506586 2021 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 NBPF25P-201ENST00000606775 2019 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 PIGN-221ENST00000638183 4046 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC027097.2-201ENST00000588925 1976 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RIOK2-201ENST00000283109 3922 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 KRT73-AS1-203ENST00000552364 3808 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 USP37-204ENST00000418019 3353 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CCDC63-204ENST00000552694 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 SULT1C2-202ENST00000326853 2828 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 FCGR2A-202ENST00000367972 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 MTND4P34-201ENST00000572715 1371 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RNU6-500P-201ENST00000362349 107 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 Y_RNA.18-201ENST00000362461 102 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 LEMD1-204ENST00000367153 929 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 SNORA7B-201ENST00000384360 139 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 TRBV5-3-201ENST00000390362 343 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 H2AFZP3-201ENST00000394213 387 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 PCNAP3-201ENST00000397222 778 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RPL12P27-201ENST00000414870 496 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC008937.2-201ENST00000415589 619 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RBMY2GP-201ENST00000418671 1034 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RNGTTP1-201ENST00000420965 728 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 YBX1P8-201ENST00000421881 943 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 MGAT2P2-201ENST00000427194 797 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RBMY2NP-201ENST00000434454 1028 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 HMGB3P10-201ENST00000434734 572 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 MTND1P1-201ENST00000445453 368 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AL591363.1-201ENST00000450091 483 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RPL23AP35-201ENST00000451906 501 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AP003774.3-201ENST00000457725 985 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RN7SL201P-201ENST00000482306 296 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RPS7P6-201ENST00000485777 579 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 HOXB-AS1-203ENST00000504972 680 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC025188.1-201ENST00000507514 600 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 IGBP1P5-201ENST00000507524 1000 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CBX3P3-201ENST00000508108 532 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 GZMB-205ENST00000526004 819 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 SDHCP4-201ENST00000532834 510 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC137767.1-202ENST00000543072 752 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC144548.1-201ENST00000549577 324 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CRTC3-AS1-201ENST00000558105 502 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CCDC32-203ENST00000558113 576 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CCDC32-210ENST00000559911 677 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CCDC32-212ENST00000560305 557 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 NPM1P47-201ENST00000560843 856 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 DTNA-220ENST00000590831 847 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AP003465.2-201ENST00000602571 373 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 MTCYBP22-201ENST00000603788 447 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RBM11P1-201ENST00000604951 799 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 MIR6751-201ENST00000610479 63 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AC109587.1-213ENST00000610844 652 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CACNB2-213ENST00000612134 3825 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AL445670.1-201ENST00000618889 801 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms