Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RPS10P14-201ENST00000440748 502 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.15□□□□□ -1.42
PKNOX1P55347 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.15□□□□□ -1.42
PKNOX1P55347 RPS27AP3-201ENST00000453803 454 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.15□□□□□ -1.42
PKNOX1P55347 EIF3LP2-201ENST00000457262 807 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 OR9A1P-202ENST00000484361 945 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 AC073648.3-201ENST00000504939 925 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 AC008868.1-201ENST00000509786 737 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 SCARNA11.1-201ENST00000516918 132 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.15□□□□□ -1.42
PKNOX1P55347 AP002004.1-206ENST00000532441 876 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 TPRX1P1-201ENST00000557620 319 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 AC093524.1-201ENST00000564266 1094 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC6.15□□□□□ -1.42
PKNOX1P55347 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.15□□□□□ -1.42
PKNOX1P55347 AL512430.4-201ENST00000603085 613 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 AC016590.3-201ENST00000611171 753 ntBASIC6.15□□□□□ -1.42
PKNOX1P55347 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
PKNOX1P55347 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
PKNOX1P55347 MBD5-221ENST00000637159 902 ntTSL 5 BASIC6.15□□□□□ -1.42
PKNOX1P55347 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
PKNOX1P55347 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.15□□□□□ -1.43
PKNOX1P55347 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
PKNOX1P55347 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.15□□□□□ -1.43
PKNOX1P55347 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
PKNOX1P55347 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.15□□□□□ -1.43
PKNOX1P55347 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
PKNOX1P55347 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.14□□□□□ -1.43
PKNOX1P55347 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AP001157.1-201ENST00000550837 2339 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 USP9YP3-201ENST00000434481 1766 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
PKNOX1P55347 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
PKNOX1P55347 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 OR7A2P-201ENST00000304105 930 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 SNORD35A-201ENST00000363389 86 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.14□□□□□ -1.43
PKNOX1P55347 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
PKNOX1P55347 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.14□□□□□ -1.43
PKNOX1P55347 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 BMS1P11-201ENST00000442351 885 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 DNAJC19P5-201ENST00000443295 316 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.14□□□□□ -1.43
PKNOX1P55347 BMS1P9-201ENST00000457640 885 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 AL355032.1-201ENST00000472981 438 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.14□□□□□ -1.43
PKNOX1P55347 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6.14□□□□□ -1.43
PKNOX1P55347 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC6.14□□□□□ -1.43
PKNOX1P55347 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC009729.1-201ENST00000548873 1133 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 HNRNPCP1-201ENST00000556181 766 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.14□□□□□ -1.43
PKNOX1P55347 MIR7159-201ENST00000620587 66 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.14□□□□□ -1.43
PKNOX1P55347 CCNT2P1-201ENST00000423082 1315 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
PKNOX1P55347 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC022164.1-201ENST00000568767 2673 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.14□□□□□ -1.43
PKNOX1P55347 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AC130360.2-201ENST00000533477 1556 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
PKNOX1P55347 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
PKNOX1P55347 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.14□□□□□ -1.43
PKNOX1P55347 AL359955.1-201ENST00000455242 3275 ntBASIC6.14□□□□□ -1.43
PKNOX1P55347 AC004023.1-201ENST00000561473 1744 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.13□□□□□ -1.43
PKNOX1P55347 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
PKNOX1P55347 AC137056.2-201ENST00000624055 1958 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.13□□□□□ -1.43
PKNOX1P55347 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 AL121768.1-201ENST00000613917 2544 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
PKNOX1P55347 RNA5SP308-201ENST00000362532 115 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 RNU1-84P-201ENST00000365447 164 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 MIR138-2-201ENST00000384916 84 ntBASIC6.13□□□□□ -1.43
PKNOX1P55347 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms