Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC009090.3-201ENST00000616553 565 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AL669942.2-201ENST00000620352 697 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC078909.2-201ENST00000620584 398 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AL669830.1-201ENST00000621457 656 ntBASIC6.51□□□□□ -1.37
MSX2P35548 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AL359745.1-201ENST00000626943 760 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 AL121594.5-201ENST00000631724 573 ntBASIC6.51□□□□□ -1.37
MSX2P35548 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 AL137058.3-201ENST00000624531 3099 ntBASIC6.51□□□□□ -1.37
MSX2P35548 EEF1A1P20-201ENST00000514852 1386 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 AL390862.1-201ENST00000635467 1469 ntBASIC6.51□□□□□ -1.37
MSX2P35548 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 AC006600.2-201ENST00000624834 2506 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 AC096992.2-201ENST00000609553 1684 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AC007485.2-201ENST00000623493 1667 ntBASIC6.5□□□□□ -1.37
MSX2P35548 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 AL138847.1-201ENST00000258651 546 ntBASIC6.5□□□□□ -1.37
MSX2P35548 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 Y_RNA.62-201ENST00000362840 99 ntBASIC6.5□□□□□ -1.37
MSX2P35548 Y_RNA.318-201ENST00000365131 97 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AL451142.1-201ENST00000375867 775 ntBASIC6.5□□□□□ -1.37
MSX2P35548 RNA5SP297-201ENST00000391029 113 ntBASIC6.5□□□□□ -1.37
MSX2P35548 LRRC37BP1-201ENST00000398851 714 ntBASIC6.5□□□□□ -1.37
MSX2P35548 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 TRIM60P5Y-201ENST00000413946 574 ntBASIC6.5□□□□□ -1.37
MSX2P35548 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 AL158827.1-201ENST00000416300 391 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AL138828.1-207ENST00000417643 734 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 EMC3-AS1-204ENST00000430621 683 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 XKRY2-201ENST00000442362 1093 ntBASIC6.5□□□□□ -1.37
MSX2P35548 RPL21P33-201ENST00000444831 484 ntBASIC6.5□□□□□ -1.37
MSX2P35548 RPL34P34-201ENST00000465389 354 ntBASIC6.5□□□□□ -1.37
MSX2P35548 CABYRP1-201ENST00000465493 1045 ntBASIC6.5□□□□□ -1.37
MSX2P35548 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 RN7SL516P-201ENST00000496127 297 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 AF186996.3-201ENST00000509527 964 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC6.5□□□□□ -1.37
MSX2P35548 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 SFTA3-210ENST00000521945 1116 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 AC126755.2-209ENST00000531453 699 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 AC084880.4-201ENST00000538405 577 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 AC138969.1-212ENST00000541593 699 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 NPIPA5-203ENST00000543801 699 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC6.5□□□□□ -1.37
MSX2P35548 AC004817.1-201ENST00000553621 721 ntTSL 4 BASIC6.5□□□□□ -1.37
MSX2P35548 GLRXP2-201ENST00000555594 321 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 PDCD6IPP2-205ENST00000565892 498 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC6.5□□□□□ -1.37
MSX2P35548 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 AC011492.1-201ENST00000600023 315 ntBASIC6.5□□□□□ -1.37
MSX2P35548 OR7E94P-202ENST00000601375 790 ntBASIC6.5□□□□□ -1.37
MSX2P35548 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX2P35548 AC091768.1-201ENST00000609258 930 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AC096586.2-201ENST00000610260 441 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AC021755.4-201ENST00000616620 456 ntBASIC6.5□□□□□ -1.37
MSX2P35548 AC026585.1-201ENST00000619582 524 ntBASIC6.5□□□□□ -1.37
MSX2P35548 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 PARP4P1-201ENST00000435945 2337 ntBASIC6.5□□□□□ -1.37
MSX2P35548 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms