Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
APOEP02649 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
APOEP02649 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
APOEP02649 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
APOEP02649 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
APOEP02649 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
APOEP02649 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
APOEP02649 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.7□□□□□ -1.34
APOEP02649 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
APOEP02649 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 AC125238.2-201ENST00000430003 1440 ntBASIC6.7□□□□□ -1.34
APOEP02649 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 RNA5SP350-201ENST00000363298 111 ntBASIC6.7□□□□□ -1.34
APOEP02649 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
APOEP02649 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.7□□□□□ -1.34
APOEP02649 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC6.7□□□□□ -1.34
APOEP02649 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.7□□□□□ -1.34
APOEP02649 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.7□□□□□ -1.34
APOEP02649 AC098818.1-201ENST00000478593 252 ntBASIC6.7□□□□□ -1.34
APOEP02649 PPP1R11P1-201ENST00000486095 376 ntBASIC6.7□□□□□ -1.34
APOEP02649 AC117500.1-201ENST00000497352 755 ntBASIC6.7□□□□□ -1.34
APOEP02649 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.7□□□□□ -1.34
APOEP02649 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.7□□□□□ -1.34
APOEP02649 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 AP003033.2-201ENST00000528901 805 ntBASIC6.7□□□□□ -1.34
APOEP02649 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.7□□□□□ -1.34
APOEP02649 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.7□□□□□ -1.34
APOEP02649 AC063977.7-201ENST00000594454 337 ntBASIC6.7□□□□□ -1.34
APOEP02649 AC011500.1-201ENST00000601963 469 ntBASIC6.7□□□□□ -1.34
APOEP02649 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
APOEP02649 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.7□□□□□ -1.34
APOEP02649 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.7□□□□□ -1.34
APOEP02649 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
APOEP02649 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
APOEP02649 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
APOEP02649 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
APOEP02649 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.69□□□□□ -1.34
APOEP02649 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC6.69□□□□□ -1.34
APOEP02649 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.69□□□□□ -1.34
APOEP02649 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.69□□□□□ -1.34
APOEP02649 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 SNORD16-201ENST00000362803 99 ntBASIC6.69□□□□□ -1.34
APOEP02649 PSMA6P1-201ENST00000400275 741 ntBASIC6.69□□□□□ -1.34
APOEP02649 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 RN7SKP281-201ENST00000410472 352 ntBASIC6.69□□□□□ -1.34
APOEP02649 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
APOEP02649 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.69□□□□□ -1.34
APOEP02649 CLNS1AP1-201ENST00000435954 682 ntBASIC6.69□□□□□ -1.34
APOEP02649 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.69□□□□□ -1.34
APOEP02649 COX4I1P2-201ENST00000447446 547 ntBASIC6.69□□□□□ -1.34
APOEP02649 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
APOEP02649 RPL17P2-201ENST00000491913 451 ntBASIC6.69□□□□□ -1.34
APOEP02649 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.69□□□□□ -1.34
APOEP02649 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.69□□□□□ -1.34
APOEP02649 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.69□□□□□ -1.34
APOEP02649 RNA5SP418-201ENST00000515951 117 ntBASIC6.69□□□□□ -1.34
APOEP02649 SNORA81.2-201ENST00000516868 170 ntBASIC6.69□□□□□ -1.34
APOEP02649 AC116917.1-201ENST00000520558 305 ntBASIC6.69□□□□□ -1.34
APOEP02649 CYCSP25-201ENST00000525280 316 ntBASIC6.69□□□□□ -1.34
APOEP02649 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC6.69□□□□□ -1.34
APOEP02649 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.69□□□□□ -1.34
APOEP02649 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.69□□□□□ -1.34
APOEP02649 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
APOEP02649 AC026898.1-201ENST00000586404 571 ntBASIC6.69□□□□□ -1.34
APOEP02649 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.69□□□□□ -1.34
APOEP02649 AL589863.1-201ENST00000595383 631 ntBASIC6.69□□□□□ -1.34
APOEP02649 AC012676.3-201ENST00000614983 479 ntBASIC6.69□□□□□ -1.34
APOEP02649 TCL6_3.1-201ENST00000619064 137 ntBASIC6.69□□□□□ -1.34
APOEP02649 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.69□□□□□ -1.34
APOEP02649 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.69□□□□□ -1.34
APOEP02649 AC130360.2-201ENST00000533477 1556 ntBASIC6.69□□□□□ -1.34
APOEP02649 AC093297.3-201ENST00000607056 2517 ntBASIC6.69□□□□□ -1.34
APOEP02649 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
APOEP02649 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.68□□□□□ -1.34
APOEP02649 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.68□□□□□ -1.34
APOEP02649 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms