Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.78■□□□□ 0.6
SCN3AQ9NY46 AL121829.2-201ENST00000620908 328 ntBASIC18.78■□□□□ 0.6
SCN3AQ9NY46 AL023875.1-201ENST00000640777 796 ntBASIC18.78■□□□□ 0.6
SCN3AQ9NY46 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 KRT16P6-202ENST00000425692 1426 ntBASIC18.78■□□□□ 0.6
SCN3AQ9NY46 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 KRT18P29-201ENST00000397031 1267 ntBASIC18.78■□□□□ 0.6
SCN3AQ9NY46 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN3AQ9NY46 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 AP001271.2-201ENST00000624018 1556 ntBASIC18.77■□□□□ 0.6
SCN3AQ9NY46 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 GCSHP5-201ENST00000443090 522 ntBASIC18.77■□□□□ 0.6
SCN3AQ9NY46 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN3AQ9NY46 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SCN3AQ9NY46 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
SCN3AQ9NY46 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.77■□□□□ 0.59
SCN3AQ9NY46 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.77■□□□□ 0.59
SCN3AQ9NY46 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SCN3AQ9NY46 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 AC124016.1-201ENST00000609552 612 ntBASIC18.76■□□□□ 0.59
SCN3AQ9NY46 AC066615.1-201ENST00000640911 628 ntBASIC18.76■□□□□ 0.59
SCN3AQ9NY46 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 RPPH1-201ENST00000516869 333 ntBASIC18.76■□□□□ 0.59
SCN3AQ9NY46 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN3AQ9NY46 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SCN3AQ9NY46 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.75■□□□□ 0.59
SCN3AQ9NY46 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.75■□□□□ 0.59
SCN3AQ9NY46 HLA-G-202ENST00000376815 851 ntBASIC18.75■□□□□ 0.59
SCN3AQ9NY46 HLA-G-203ENST00000376818 1127 ntBASIC18.75■□□□□ 0.59
SCN3AQ9NY46 KRASP1-201ENST00000407852 552 ntBASIC18.75■□□□□ 0.59
SCN3AQ9NY46 AC239809.2-201ENST00000415381 517 ntBASIC18.75■□□□□ 0.59
SCN3AQ9NY46 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.75■□□□□ 0.59
SCN3AQ9NY46 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.75■□□□□ 0.59
SCN3AQ9NY46 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.75■□□□□ 0.59
SCN3AQ9NY46 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms