Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPS26P6-201ENST00000475156 348 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC021820.1-201ENST00000525564 808 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AL445383.1-201ENST00000554689 874 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC024255.1-201ENST00000614376 102 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC005277.2-201ENST00000617898 390 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC061999.1-201ENST00000624454 177 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC027559.1-201ENST00000636288 271 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC140479.4-205ENST00000636339 820 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC020658.2-201ENST00000559030 4020 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC062022.1-201ENST00000451026 1684 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 EEF1GP6-201ENST00000402309 905 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AL590635.1-201ENST00000406314 586 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AL023284.3-201ENST00000407767 334 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 NPM1P25-201ENST00000429734 854 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 UBQLN1P1-207ENST00000441056 1169 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 RPL26P30-201ENST00000453533 435 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 OR7L1P-201ENST00000456181 380 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 RN7SL492P-201ENST00000460700 295 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 UOX-201ENST00000471089 899 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC022730.1-201ENST00000473114 568 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 RPL17P2-201ENST00000491913 451 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC131935.1-201ENST00000524621 333 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AP005639.1-201ENST00000526939 192 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AP002004.1-206ENST00000532441 876 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 RPL41P2-201ENST00000544920 409 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC073916.1-201ENST00000545095 130 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 DCN-209ENST00000546745 1026 ntTSL 3 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 CHEK2P2-201ENST00000554701 672 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC106785.4-201ENST00000569492 412 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 MIR378C-201ENST00000578683 81 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC010615.3-201ENST00000597319 394 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AP001264.1-201ENST00000620602 703 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC017037.4-201ENST00000624526 826 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC233968.1-201ENST00000611212 1300 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
NKX3-1Q99801 HSPD1P8-201ENST00000400121 1658 ntBASIC5.63□□□□□ -1.51
NKX3-1Q99801 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC5.63□□□□□ -1.51
NKX3-1Q99801 AC009220.2-201ENST00000489759 1751 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms