Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 DCLRE1C-203ENST00000378242 1933 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 LINC00955-202ENST00000514422 1502 ntTSL 4 BASIC7.58□□□□□ -1.2
MSX1P28360 DCLRE1C-206ENST00000378254 2485 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 TTC26-202ENST00000430935 4198 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 AF121897.1-201ENST00000411867 3980 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AMZ2-210ENST00000580753 1339 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 ANAPC5-208ENST00000535482 2077 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 DGKG-203ENST00000382164 3152 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 LINC00683-202ENST00000579781 3510 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 AL008638.2-201ENST00000453934 2383 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 AL080312.1-201ENST00000256654 824 ntBASIC7.58□□□□□ -1.2
MSX1P28360 MYL6-201ENST00000293422 664 ntAPPRIS ALT1 TSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 TBX5-201ENST00000310346 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 C2orf80-201ENST00000341287 1238 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 PTTG1-201ENST00000352433 753 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
MSX1P28360 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 LINC01644-201ENST00000405369 984 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 CCNG1P1-201ENST00000406783 885 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC008770.1-201ENST00000406892 1257 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 AL356432.2-201ENST00000407841 422 ntBASIC7.58□□□□□ -1.2
MSX1P28360 RPL26P37-201ENST00000411983 438 ntBASIC7.58□□□□□ -1.2
MSX1P28360 TMSB10P1-201ENST00000415070 132 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC7.58□□□□□ -1.2
MSX1P28360 AC093580.1-201ENST00000420549 671 ntTSL 3 BASIC7.58□□□□□ -1.2
MSX1P28360 AC007435.1-201ENST00000421086 415 ntBASIC7.58□□□□□ -1.2
MSX1P28360 PIGX-204ENST00000421265 677 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 AL513174.1-201ENST00000423182 629 ntBASIC7.58□□□□□ -1.2
MSX1P28360 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 AC108448.2-201ENST00000431546 730 ntBASIC7.58□□□□□ -1.2
MSX1P28360 LINC01865-202ENST00000436808 853 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 AC002366.1-201ENST00000446186 1190 ntBASIC7.58□□□□□ -1.2
MSX1P28360 PSPHP1-201ENST00000450062 261 ntBASIC7.58□□□□□ -1.2
MSX1P28360 OR6C5P-201ENST00000452388 923 ntBASIC7.58□□□□□ -1.2
MSX1P28360 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC7.58□□□□□ -1.2
MSX1P28360 RPS20P4-201ENST00000461659 355 ntBASIC7.58□□□□□ -1.2
MSX1P28360 RN7SL856P-201ENST00000461754 298 ntBASIC7.58□□□□□ -1.2
MSX1P28360 MTND1P16-201ENST00000465177 898 ntBASIC7.58□□□□□ -1.2
MSX1P28360 RPSAP39-201ENST00000467439 883 ntBASIC7.58□□□□□ -1.2
MSX1P28360 RN7SL146P-201ENST00000472338 297 ntBASIC7.58□□□□□ -1.2
MSX1P28360 RBM43P1-201ENST00000476891 1081 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC013828.1-201ENST00000481845 158 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC018695.1-201ENST00000484096 664 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC114964.1-201ENST00000502306 1111 ntBASIC7.58□□□□□ -1.2
MSX1P28360 CCDC11P1-201ENST00000503137 1162 ntBASIC7.58□□□□□ -1.2
MSX1P28360 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC7.58□□□□□ -1.2
MSX1P28360 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 LINC02121-201ENST00000507950 432 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 RNU6-358P-201ENST00000516564 75 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC087269.1-201ENST00000522213 666 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 AC013701.1-201ENST00000522657 465 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC7.58□□□□□ -1.2
MSX1P28360 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC7.58□□□□□ -1.2
MSX1P28360 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 OTX2-204ENST00000554788 835 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 AC044913.1-201ENST00000557200 430 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC010547.7-201ENST00000570323 333 ntBASIC7.58□□□□□ -1.2
MSX1P28360 MIR3680-2-201ENST00000578247 87 ntBASIC7.58□□□□□ -1.2
MSX1P28360 MIR3680-1-201ENST00000581433 87 ntBASIC7.58□□□□□ -1.2
MSX1P28360 JPT1-211ENST00000581874 517 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 AC096708.1-201ENST00000584419 658 ntBASIC7.58□□□□□ -1.2
MSX1P28360 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 AC006130.1-201ENST00000589365 555 ntTSL 4 BASIC7.58□□□□□ -1.2
MSX1P28360 AC022432.1-201ENST00000595739 310 ntBASIC7.58□□□□□ -1.2
MSX1P28360 KC877982.1-201ENST00000602313 470 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC012065.4-201ENST00000602445 679 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AL391807.1-201ENST00000603261 712 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 Z98200.1-201ENST00000607298 470 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC138904.2-201ENST00000614412 107 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AC239809.3-218ENST00000616018 1023 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 AC239859.6-201ENST00000622095 213 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AP000577.1-201ENST00000624366 878 ntBASIC7.58□□□□□ -1.2
MSX1P28360 AL359745.1-201ENST00000626943 760 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 AC073488.11-201ENST00000633298 754 ntBASIC7.58□□□□□ -1.2
MSX1P28360 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 RASSF3-206ENST00000637125 1060 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 HEATR6-203ENST00000585976 3288 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 HEATR6-212ENST00000613428 3287 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 MAGEE1-201ENST00000361470 3630 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
MSX1P28360 MPZL3-201ENST00000278949 3968 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 PAX8-AS1-201ENST00000333145 2319 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 PHACTR2P1-201ENST00000605639 1414 ntBASIC7.58□□□□□ -1.2
MSX1P28360 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 PROX2-202ENST00000556489 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 VPS4B-201ENST00000238497 3324 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 CDK1-203ENST00000395284 1913 ntAPPRIS P2 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 CDC25C-203ENST00000415130 1556 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 AL512504.2-201ENST00000445455 1909 ntBASIC7.58□□□□□ -1.2
MSX1P28360 CCPG1-212ENST00000569205 2970 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 MRAS-211ENST00000621127 3801 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC7.58□□□□□ -1.2
MSX1P28360 LDAH-201ENST00000237822 2907 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms