Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 CASP1P2-201ENST00000526830 1258 ntBASIC8.2□□□□□ -1.1
LIG1P18858 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC8.2□□□□□ -1.1
LIG1P18858 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC8.2□□□□□ -1.1
LIG1P18858 OOSP1P2-201ENST00000579644 351 ntBASIC8.2□□□□□ -1.1
LIG1P18858 AC025175.1-201ENST00000606482 759 ntBASIC8.2□□□□□ -1.1
LIG1P18858 AL121809.2-201ENST00000613169 341 ntBASIC8.2□□□□□ -1.1
LIG1P18858 BX005040.2-201ENST00000620504 370 ntBASIC8.2□□□□□ -1.1
LIG1P18858 AC127071.1-201ENST00000624997 712 ntBASIC8.2□□□□□ -1.1
LIG1P18858 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC8.2□□□□□ -1.1
LIG1P18858 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC8.2□□□□□ -1.1
LIG1P18858 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC8.2□□□□□ -1.1
LIG1P18858 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC8.2□□□□□ -1.1
LIG1P18858 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC8.2□□□□□ -1.1
LIG1P18858 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
LIG1P18858 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
LIG1P18858 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
LIG1P18858 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 DCLRE1C-211ENST00000396817 2761 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
LIG1P18858 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC8.2□□□□□ -1.1
LIG1P18858 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
LIG1P18858 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC8.19□□□□□ -1.1
LIG1P18858 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC8.19□□□□□ -1.1
LIG1P18858 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 OR51H1-201ENST00000322059 999 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
LIG1P18858 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 RNU4-28P-201ENST00000364739 141 ntBASIC8.19□□□□□ -1.1
LIG1P18858 RNA5SP396-201ENST00000364834 120 ntBASIC8.19□□□□□ -1.1
LIG1P18858 Y_RNA.505-201ENST00000384489 102 ntBASIC8.19□□□□□ -1.1
LIG1P18858 HNRNPH1P2-201ENST00000396845 1210 ntBASIC8.19□□□□□ -1.1
LIG1P18858 PPIAP30-201ENST00000415473 519 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC8.19□□□□□ -1.1
LIG1P18858 EEF1GP7-201ENST00000422983 703 ntBASIC8.19□□□□□ -1.1
LIG1P18858 MTND4LP13-201ENST00000425022 298 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC8.19□□□□□ -1.1
LIG1P18858 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC8.19□□□□□ -1.1
LIG1P18858 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC8.19□□□□□ -1.1
LIG1P18858 RN7SL251P-201ENST00000464175 297 ntBASIC8.19□□□□□ -1.1
LIG1P18858 RN7SL145P-201ENST00000469955 296 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC131233.1-201ENST00000479200 955 ntBASIC8.19□□□□□ -1.1
LIG1P18858 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC8.19□□□□□ -1.1
LIG1P18858 AC108157.1-201ENST00000510511 539 ntBASIC8.19□□□□□ -1.1
LIG1P18858 SUMO2P7-201ENST00000511179 285 ntBASIC8.19□□□□□ -1.1
LIG1P18858 RN7SKP233-201ENST00000517005 110 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC8.19□□□□□ -1.1
LIG1P18858 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC8.19□□□□□ -1.1
LIG1P18858 AC083843.1-201ENST00000521444 849 ntTSL 4 BASIC8.19□□□□□ -1.1
LIG1P18858 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC8.19□□□□□ -1.1
LIG1P18858 OR4A41P-201ENST00000533053 928 ntBASIC8.19□□□□□ -1.1
LIG1P18858 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC8.19□□□□□ -1.1
LIG1P18858 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC8.19□□□□□ -1.1
LIG1P18858 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC8.19□□□□□ -1.1
LIG1P18858 RN7SL835P-201ENST00000579920 262 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC011193.2-201ENST00000582638 367 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC061975.8-201ENST00000587058 721 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC8.19□□□□□ -1.1
LIG1P18858 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC8.19□□□□□ -1.1
LIG1P18858 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC8.19□□□□□ -1.1
LIG1P18858 AC011492.1-201ENST00000600023 315 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AL606834.3-201ENST00000602615 496 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC021171.1-201ENST00000603137 706 ntBASIC8.19□□□□□ -1.1
LIG1P18858 AC092184.1-201ENST00000625042 715 ntBASIC8.19□□□□□ -1.1
LIG1P18858 OR5AU1-204ENST00000641822 1197 ntBASIC8.19□□□□□ -1.1
LIG1P18858 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
LIG1P18858 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 MTND4P10-201ENST00000446199 1363 ntBASIC8.19□□□□□ -1.1
LIG1P18858 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC8.19□□□□□ -1.1
LIG1P18858 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 AC062029.1-202ENST00000606164 3651 ntBASIC8.19□□□□□ -1.1
LIG1P18858 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
LIG1P18858 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC8.19□□□□□ -1.1
LIG1P18858 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC8.19□□□□□ -1.1
LIG1P18858 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC8.19□□□□□ -1.1
LIG1P18858 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
LIG1P18858 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
LIG1P18858 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC8.18□□□□□ -1.1
LIG1P18858 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC8.18□□□□□ -1.1
LIG1P18858 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
LIG1P18858 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
LIG1P18858 ZNF710-AS1-202ENST00000620791 2133 ntBASIC8.18□□□□□ -1.1
LIG1P18858 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC8.18□□□□□ -1.1
LIG1P18858 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms