Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.85■□□□□ 0.61
LIM2P55344 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.85■□□□□ 0.61
LIM2P55344 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
LIM2P55344 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIM2P55344 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIM2P55344 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIM2P55344 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIM2P55344 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.84■□□□□ 0.61
LIM2P55344 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIM2P55344 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.84■□□□□ 0.61
LIM2P55344 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.84■□□□□ 0.61
LIM2P55344 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIM2P55344 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIM2P55344 SOX15-203ENST00000570788 1093 ntBASIC18.84■□□□□ 0.61
LIM2P55344 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
LIM2P55344 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.84■□□□□ 0.61
LIM2P55344 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.84■□□□□ 0.61
LIM2P55344 TCF3P1-201ENST00000423021 1937 ntBASIC18.84■□□□□ 0.61
LIM2P55344 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
LIM2P55344 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
LIM2P55344 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIM2P55344 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIM2P55344 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
LIM2P55344 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIM2P55344 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIM2P55344 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.83■□□□□ 0.61
LIM2P55344 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
LIM2P55344 AL691432.2-201ENST00000607222 2038 ntBASIC18.83■□□□□ 0.61
LIM2P55344 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.83■□□□□ 0.61
LIM2P55344 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIM2P55344 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIM2P55344 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.83■□□□□ 0.61
LIM2P55344 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.83■□□□□ 0.61
LIM2P55344 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.83■□□□□ 0.6
LIM2P55344 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIM2P55344 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIM2P55344 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIM2P55344 CD99P1-205ENST00000527459 561 ntBASIC18.83■□□□□ 0.6
LIM2P55344 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
LIM2P55344 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.83■□□□□ 0.6
LIM2P55344 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIM2P55344 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.83■□□□□ 0.6
LIM2P55344 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.83■□□□□ 0.6
LIM2P55344 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.83■□□□□ 0.6
LIM2P55344 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIM2P55344 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIM2P55344 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIM2P55344 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.83■□□□□ 0.6
LIM2P55344 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
LIM2P55344 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.82■□□□□ 0.6
LIM2P55344 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 UNC93B4-201ENST00000505679 747 ntBASIC18.82■□□□□ 0.6
LIM2P55344 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.82■□□□□ 0.6
LIM2P55344 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.82■□□□□ 0.6
LIM2P55344 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.82■□□□□ 0.6
LIM2P55344 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIM2P55344 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIM2P55344 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.82■□□□□ 0.6
LIM2P55344 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
LIM2P55344 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.81■□□□□ 0.6
LIM2P55344 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LIM2P55344 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.81■□□□□ 0.6
LIM2P55344 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LIM2P55344 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
LIM2P55344 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.81■□□□□ 0.6
LIM2P55344 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.81■□□□□ 0.6
LIM2P55344 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.81■□□□□ 0.6
LIM2P55344 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIM2P55344 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LIM2P55344 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LIM2P55344 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms