Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC239367.3-201ENST00000428996 814 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC092106.2-201ENST00000436597 487 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 DEFA11P-201ENST00000446470 261 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 RBMY2BP-202ENST00000451071 1156 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 RPL26P30-201ENST00000453533 435 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC018797.1-201ENST00000510791 255 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AL845552.1-201ENST00000556820 323 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC002310.3-201ENST00000569728 723 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 GTF2IP6-201ENST00000583143 541 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 RN7SL261P-201ENST00000613441 282 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 MIR7854-201ENST00000620068 65 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC010809.3-201ENST00000621310 641 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC006600.2-201ENST00000624834 2506 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AP004289.1-201ENST00000436307 2205 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 QRSL1P1-201ENST00000400977 1540 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 TMC3-AS1-206ENST00000612811 2726 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 SNORA70.3-201ENST00000365075 132 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 RNU6-316P-201ENST00000391027 107 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 RBBP4P5-201ENST00000398583 1266 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 HMGN1P2-201ENST00000445197 310 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC114982.2-201ENST00000461396 358 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AP002884.1-201ENST00000479691 655 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC117500.1-201ENST00000497352 755 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC006512.2-201ENST00000543250 486 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 EEF1A1P17-201ENST00000547505 1275 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 DPPA3P2-202ENST00000557188 1219 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AL365223.1-201ENST00000574864 1297 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC004241.2-201ENST00000614562 444 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.75□□□□□ -1.33
HDDC3Q8N4P3 ENO1P4-201ENST00000416471 1785 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC092821.2-201ENST00000545710 2042 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 PPIAP24-201ENST00000328558 471 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 RNA5SP279-201ENST00000365513 117 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 SNORA11B-201ENST00000408175 129 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 RANP6-201ENST00000413691 644 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC009500.1-201ENST00000420684 583 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 RPSAP41-201ENST00000439695 860 ntBASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms