Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 ZNF969P-201ENST00000510345 2341 ntBASIC6.22□□□□□ -1.41
SOX3P41225 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.22□□□□□ -1.41
SOX3P41225 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.22□□□□□ -1.41
SOX3P41225 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SOX3P41225 AC010894.1-201ENST00000313760 361 ntBASIC6.22□□□□□ -1.41
SOX3P41225 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 RNA5SP308-201ENST00000362532 115 ntBASIC6.22□□□□□ -1.41
SOX3P41225 RNA5SP65-201ENST00000363166 119 ntBASIC6.22□□□□□ -1.41
SOX3P41225 SNORA70.3-201ENST00000365075 132 ntBASIC6.22□□□□□ -1.41
SOX3P41225 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 SNORD94-201ENST00000386037 137 ntBASIC6.22□□□□□ -1.41
SOX3P41225 RPL31-202ENST00000409000 641 ntTSL 2 BASIC6.22□□□□□ -1.41
SOX3P41225 AC068138.1-201ENST00000412635 217 ntBASIC6.22□□□□□ -1.41
SOX3P41225 AL713922.1-201ENST00000416477 747 ntBASIC6.22□□□□□ -1.41
SOX3P41225 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.22□□□□□ -1.41
SOX3P41225 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.22□□□□□ -1.41
SOX3P41225 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.22□□□□□ -1.41
SOX3P41225 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.22□□□□□ -1.41
SOX3P41225 RN7SL83P-201ENST00000468131 297 ntBASIC6.22□□□□□ -1.41
SOX3P41225 OR4A13P-201ENST00000529316 942 ntBASIC6.22□□□□□ -1.41
SOX3P41225 AC084851.2-201ENST00000530377 364 ntBASIC6.22□□□□□ -1.41
SOX3P41225 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.22□□□□□ -1.41
SOX3P41225 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC6.22□□□□□ -1.41
SOX3P41225 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC6.22□□□□□ -1.41
SOX3P41225 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.22□□□□□ -1.41
SOX3P41225 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.22□□□□□ -1.41
SOX3P41225 RPL7AP69-201ENST00000595306 806 ntBASIC6.22□□□□□ -1.41
SOX3P41225 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC6.22□□□□□ -1.41
SOX3P41225 AL390877.1-201ENST00000605704 214 ntBASIC6.22□□□□□ -1.41
SOX3P41225 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.22□□□□□ -1.41
SOX3P41225 AC120057.5-201ENST00000623840 154 ntBASIC6.22□□□□□ -1.41
SOX3P41225 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.22□□□□□ -1.41
SOX3P41225 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SOX3P41225 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.22□□□□□ -1.41
SOX3P41225 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.22□□□□□ -1.41
SOX3P41225 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
SOX3P41225 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC6.22□□□□□ -1.41
SOX3P41225 AL117378.2-201ENST00000622916 1337 ntBASIC6.22□□□□□ -1.41
SOX3P41225 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SOX3P41225 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SOX3P41225 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.41
SOX3P41225 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.21□□□□□ -1.41
SOX3P41225 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.21□□□□□ -1.41
SOX3P41225 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.41
SOX3P41225 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX3P41225 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX3P41225 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SOX3P41225 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX3P41225 RNU1-55P-201ENST00000365510 158 ntBASIC6.21□□□□□ -1.42
SOX3P41225 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SOX3P41225 AL353626.3-201ENST00000413399 657 ntBASIC6.21□□□□□ -1.42
SOX3P41225 AL596268.1-201ENST00000427910 1048 ntBASIC6.21□□□□□ -1.42
SOX3P41225 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX3P41225 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SOX3P41225 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX3P41225 AC064862.5-201ENST00000440618 334 ntBASIC6.21□□□□□ -1.42
SOX3P41225 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC6.21□□□□□ -1.42
SOX3P41225 AC099340.1-201ENST00000475247 599 ntBASIC6.21□□□□□ -1.42
SOX3P41225 RPL7AP23-201ENST00000482625 776 ntBASIC6.21□□□□□ -1.42
SOX3P41225 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX3P41225 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX3P41225 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
SOX3P41225 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.21□□□□□ -1.42
SOX3P41225 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX3P41225 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.21□□□□□ -1.42
SOX3P41225 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX3P41225 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX3P41225 MIR6503-201ENST00000622884 86 ntBASIC6.21□□□□□ -1.42
SOX3P41225 SNX18P10-201ENST00000625014 519 ntBASIC6.21□□□□□ -1.42
SOX3P41225 AC009950.2-201ENST00000636548 183 ntBASIC6.21□□□□□ -1.42
SOX3P41225 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.21□□□□□ -1.42
SOX3P41225 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.21□□□□□ -1.42
SOX3P41225 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SOX3P41225 RACGAP1P-201ENST00000550663 1879 ntBASIC6.21□□□□□ -1.42
SOX3P41225 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
SOX3P41225 AC093278.2-201ENST00000564956 2485 ntBASIC6.21□□□□□ -1.42
SOX3P41225 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX3P41225 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX3P41225 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX3P41225 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SOX3P41225 OR52B5P-204ENST00000641744 3467 ntBASIC6.2□□□□□ -1.42
SOX3P41225 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX3P41225 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 AC010168.2-201ENST00000562691 5428 ntBASIC6.2□□□□□ -1.42
SOX3P41225 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 AC009779.8-201ENST00000641684 4384 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms