Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC8.29□□□□□ -1.08
HMGB1P09429 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC8.29□□□□□ -1.08
HMGB1P09429 AC016144.1-201ENST00000548175 1087 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 AC018946.1-201ENST00000560578 458 ntTSL 5 BASIC8.29□□□□□ -1.08
HMGB1P09429 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC8.29□□□□□ -1.08
HMGB1P09429 AC130324.2-201ENST00000580873 638 ntTSL 2 BASIC8.29□□□□□ -1.08
HMGB1P09429 AC009950.1-209ENST00000595586 777 ntTSL 5 BASIC8.29□□□□□ -1.08
HMGB1P09429 AC092032.1-201ENST00000603090 165 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 AC092960.1-201ENST00000604762 351 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC8.29□□□□□ -1.08
HMGB1P09429 AC011471.4-201ENST00000638271 216 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
HMGB1P09429 AL356585.10-201ENST00000641883 123 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC8.29□□□□□ -1.08
HMGB1P09429 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC8.29□□□□□ -1.08
HMGB1P09429 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
HMGB1P09429 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC8.29□□□□□ -1.08
HMGB1P09429 PWRN1-212ENST00000569908 1435 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
HMGB1P09429 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 CASC19-281ENST00000642118 1554 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC8.28□□□□□ -1.08
HMGB1P09429 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC8.28□□□□□ -1.08
HMGB1P09429 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC8.28□□□□□ -1.08
HMGB1P09429 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 RNU4-7P-201ENST00000364758 141 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 NPM1P10-201ENST00000398310 865 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC8.28□□□□□ -1.08
HMGB1P09429 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC8.28□□□□□ -1.08
HMGB1P09429 AC006333.1-204ENST00000429396 648 ntTSL 3 BASIC8.28□□□□□ -1.08
HMGB1P09429 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
HMGB1P09429 AL513303.1-201ENST00000432452 591 ntTSL 2 BASIC8.28□□□□□ -1.08
HMGB1P09429 FTLP17-201ENST00000432567 525 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 RPL6P24-201ENST00000445338 864 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC8.28□□□□□ -1.08
HMGB1P09429 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC8.28□□□□□ -1.08
HMGB1P09429 PSMA6P2-201ENST00000457574 686 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC8.28□□□□□ -1.08
HMGB1P09429 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC8.28□□□□□ -1.08
HMGB1P09429 OR4C1P-201ENST00000530880 937 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 AP006587.6-201ENST00000582128 1091 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 GTF2IP6-201ENST00000583143 541 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC8.28□□□□□ -1.08
HMGB1P09429 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC8.28□□□□□ -1.08
HMGB1P09429 AC012510.1-201ENST00000607946 759 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 AL031777.2-201ENST00000611953 196 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 RN7SL126P-201ENST00000616400 299 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC8.28□□□□□ -1.08
HMGB1P09429 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC8.28□□□□□ -1.08
HMGB1P09429 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC8.28□□□□□ -1.08
HMGB1P09429 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC8.28□□□□□ -1.08
HMGB1P09429 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HMGB1P09429 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC8.28□□□□□ -1.08
HMGB1P09429 GOT2P1-201ENST00000440922 1309 ntBASIC8.28□□□□□ -1.08
HMGB1P09429 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
HMGB1P09429 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 AC090774.4-201ENST00000578888 1372 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 AL133243.4-201ENST00000623116 3109 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
HMGB1P09429 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 RNA5SP114-201ENST00000363780 113 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 AL359715.1-201ENST00000404330 555 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AMZ2P2-201ENST00000406819 1057 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC8.27□□□□□ -1.09
HMGB1P09429 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 ATP5LP4-201ENST00000434169 307 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AC093716.1-201ENST00000435923 377 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC8.27□□□□□ -1.09
HMGB1P09429 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC8.27□□□□□ -1.09
HMGB1P09429 HSPE1P22-201ENST00000456856 327 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC8.27□□□□□ -1.09
HMGB1P09429 GAPDHP53-201ENST00000458397 924 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 CC2D2A-207ENST00000507954 548 ntAPPRIS ALT2 TSL 2 BASIC8.27□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 264.8 ms