Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 RNA5SP85-201ENST00000365378 119 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AL590635.1-201ENST00000406314 586 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AL773545.3-201ENST00000414297 706 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 CYP4F32P-201ENST00000426492 504 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 GAPDHP37-201ENST00000442317 968 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 PFN1P11-201ENST00000445829 389 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AC131233.1-201ENST00000479200 955 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 TDGP1-201ENST00000543961 1229 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AC026826.3-201ENST00000561747 158 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 ULK4P1-202ENST00000565174 503 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 RN7SL753P-201ENST00000581238 290 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AC018690.1-201ENST00000608144 626 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AC061999.1-201ENST00000624454 177 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.83□□□□□ -1.32
HDDC3Q8N4P3 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 RPL9P21-201ENST00000392269 505 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 OR6R1P-201ENST00000431838 940 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AL645939.3-201ENST00000435408 225 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC099340.1-201ENST00000475247 599 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 RPS10P20-201ENST00000494130 463 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC091849.1-201ENST00000509920 121 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 UGT2A3P7-201ENST00000510485 734 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC025283.1-201ENST00000572039 734 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 RPL29P33-201ENST00000587474 316 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC010463.3-201ENST00000594077 500 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC015982.1-201ENST00000608113 465 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AC026951.2-201ENST00000613847 241 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 SNORA16A-202ENST00000628458 135 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 AL449283.1-201ENST00000602631 3403 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 DDX43P1-201ENST00000510713 1763 ntBASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
HDDC3Q8N4P3 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms