Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL031846.1-201ENST00000560933 314 ntBASIC5.63□□□□□ -1.51
CDX1P47902 FAM30C-201ENST00000561158 410 ntBASIC5.63□□□□□ -1.51
CDX1P47902 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC5.63□□□□□ -1.51
CDX1P47902 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC5.63□□□□□ -1.51
CDX1P47902 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC5.63□□□□□ -1.51
CDX1P47902 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC5.63□□□□□ -1.51
CDX1P47902 AC068802.1-201ENST00000603420 732 ntBASIC5.63□□□□□ -1.51
CDX1P47902 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC5.63□□□□□ -1.51
CDX1P47902 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC5.63□□□□□ -1.51
CDX1P47902 AC007347.2-201ENST00000623044 180 ntBASIC5.63□□□□□ -1.51
CDX1P47902 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC5.63□□□□□ -1.51
CDX1P47902 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC5.63□□□□□ -1.51
CDX1P47902 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CDX1P47902 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CDX1P47902 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CDX1P47902 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CDX1P47902 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CDX1P47902 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CDX1P47902 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CDX1P47902 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC5.63□□□□□ -1.51
CDX1P47902 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
CDX1P47902 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.63□□□□□ -1.51
CDX1P47902 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CDX1P47902 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
CDX1P47902 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 CUL4AP1-201ENST00000514750 1863 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC105114.1-201ENST00000624795 1862 ntBASIC5.62□□□□□ -1.51
CDX1P47902 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.62□□□□□ -1.51
CDX1P47902 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 AL133320.1-201ENST00000621423 2352 ntBASIC5.62□□□□□ -1.51
CDX1P47902 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 RNU4-23P-201ENST00000362839 140 ntBASIC5.62□□□□□ -1.51
CDX1P47902 NUDT5-202ENST00000378937 919 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 IGBP1-AS2-201ENST00000403371 513 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 SNORA11D-201ENST00000408548 128 ntBASIC5.62□□□□□ -1.51
CDX1P47902 SNORA11E-201ENST00000408778 128 ntBASIC5.62□□□□□ -1.51
CDX1P47902 RN7SKP232-201ENST00000410170 290 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AL662791.3-201ENST00000413771 776 ntBASIC5.62□□□□□ -1.51
CDX1P47902 NRIR-202ENST00000414795 506 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 AC096644.3-201ENST00000416788 338 ntBASIC5.62□□□□□ -1.51
CDX1P47902 GEMIN2P2-201ENST00000418195 715 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC117434.1-201ENST00000419971 836 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AL359633.1-201ENST00000421403 310 ntBASIC5.62□□□□□ -1.51
CDX1P47902 GSTA6P-201ENST00000424144 582 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 ARPP21-217ENST00000436702 561 ntTSL 4 BASIC5.62□□□□□ -1.51
CDX1P47902 RPL36AP55-201ENST00000454114 305 ntBASIC5.62□□□□□ -1.51
CDX1P47902 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 RPL23P10-201ENST00000468780 412 ntBASIC5.62□□□□□ -1.51
CDX1P47902 RN7SL456P-201ENST00000469290 295 ntBASIC5.62□□□□□ -1.51
CDX1P47902 RN7SL165P-201ENST00000477476 291 ntBASIC5.62□□□□□ -1.51
CDX1P47902 RPL21P42-201ENST00000488408 464 ntBASIC5.62□□□□□ -1.51
CDX1P47902 RN7SL306P-201ENST00000492941 296 ntBASIC5.62□□□□□ -1.51
CDX1P47902 RPS10P20-201ENST00000494130 463 ntBASIC5.62□□□□□ -1.51
CDX1P47902 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 RPL7L1P7-201ENST00000509986 724 ntBASIC5.62□□□□□ -1.51
CDX1P47902 RPS23-208ENST00000512493 443 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 NPM1P21-201ENST00000513394 762 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 RPL10P18-201ENST00000519384 309 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC105999.2-203ENST00000521030 663 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC5.62□□□□□ -1.51
CDX1P47902 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.62□□□□□ -1.51
CDX1P47902 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 LDHC-204ENST00000536880 957 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 PRB1-203ENST00000545626 710 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC5.62□□□□□ -1.51
CDX1P47902 HNRNPCP1-201ENST00000556181 766 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.62□□□□□ -1.51
CDX1P47902 OR4N3P-201ENST00000559395 818 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 AL023284.3-202ENST00000571188 543 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 RN7SL667P-201ENST00000582817 298 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC009955.2-201ENST00000597288 542 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AL031777.2-201ENST00000611953 196 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AL121809.2-201ENST00000613169 341 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC098590.2-201ENST00000614787 281 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC135068.4-201ENST00000622949 925 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC073263.3-201ENST00000624449 858 ntBASIC5.62□□□□□ -1.51
CDX1P47902 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC5.62□□□□□ -1.51
CDX1P47902 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 EEF1A1P28-201ENST00000450915 1403 ntBASIC5.62□□□□□ -1.51
CDX1P47902 AC061975.5-201ENST00000584928 1441 ntBASIC5.62□□□□□ -1.51
CDX1P47902 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms