Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC087894.3-201ENST00000623682 349 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 NCOA4P3-201ENST00000513203 1877 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 AL034417.4-202ENST00000642135 2236 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 ZNF402P-201ENST00000404435 3100 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 AC009237.3-203ENST00000442128 3551 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 AC129502.1-201ENST00000623261 1654 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 AC127070.3-201ENST00000503695 3263 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 RBPJP2-201ENST00000618187 1444 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 AL021877.2-201ENST00000624442 10684 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AL589993.1-201ENST00000407450 2524 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC8.3□□□□□ -1.08
HMGB1P09429 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
HMGB1P09429 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 RN7SKP55-201ENST00000364888 307 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 MIR421-201ENST00000365696 85 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AL034403.1-201ENST00000399414 885 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AL132671.1-201ENST00000415736 308 ntTSL 3 BASIC8.3□□□□□ -1.08
HMGB1P09429 SETP10-201ENST00000424368 814 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 CHCHD3P1-201ENST00000425516 676 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AC091390.2-201ENST00000432573 374 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 SLC25A24P1-202ENST00000434803 1220 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 RPL29P7-201ENST00000440227 457 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AC114878.1-201ENST00000441166 358 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AC022730.1-201ENST00000473114 568 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 PPP1R11P1-201ENST00000486095 376 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 EIF4A2P3-201ENST00000525903 1055 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AP000619.2-201ENST00000546014 969 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC8.3□□□□□ -1.08
HMGB1P09429 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC8.3□□□□□ -1.08
HMGB1P09429 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC8.3□□□□□ -1.08
HMGB1P09429 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC8.3□□□□□ -1.08
HMGB1P09429 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC8.3□□□□□ -1.08
HMGB1P09429 AC087575.1-201ENST00000585087 229 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AC005323.1-203ENST00000585303 566 ntTSL 5 BASIC8.3□□□□□ -1.08
HMGB1P09429 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC8.3□□□□□ -1.08
HMGB1P09429 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC8.3□□□□□ -1.08
HMGB1P09429 AC026367.3-201ENST00000619032 590 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 AC017002.5-201ENST00000630717 871 ntTSL 5 BASIC8.3□□□□□ -1.08
HMGB1P09429 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 AC092725.2-201ENST00000567658 1389 ntBASIC8.3□□□□□ -1.08
HMGB1P09429 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
HMGB1P09429 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
HMGB1P09429 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HMGB1P09429 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC8.29□□□□□ -1.08
HMGB1P09429 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC8.29□□□□□ -1.08
HMGB1P09429 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC8.29□□□□□ -1.08
HMGB1P09429 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC8.29□□□□□ -1.08
HMGB1P09429 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 SNORA70.5-201ENST00000365519 135 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
HMGB1P09429 HMGB3P7-201ENST00000400214 611 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 RPL5P19-201ENST00000404228 893 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 AL136131.1-201ENST00000406079 803 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 RN7SKP271-201ENST00000410528 320 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC8.29□□□□□ -1.08
HMGB1P09429 ZBTB8OSP2-201ENST00000423890 504 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC8.29□□□□□ -1.08
HMGB1P09429 AC134879.1-201ENST00000426062 394 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC8.29□□□□□ -1.08
HMGB1P09429 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC8.29□□□□□ -1.08
HMGB1P09429 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC8.29□□□□□ -1.08
HMGB1P09429 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HMGB1P09429 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC8.29□□□□□ -1.08
HMGB1P09429 RN7SL834P-201ENST00000461450 286 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 CEACAMP3-202ENST00000483806 638 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 AC096743.1-201ENST00000485172 319 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 RPL5P11-201ENST00000498068 893 ntBASIC8.29□□□□□ -1.08
HMGB1P09429 AC106760.2-201ENST00000504159 619 ntBASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms