Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 PPIAP14-201ENST00000577627 496 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC134669.1-201ENST00000581275 672 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC079315.1-201ENST00000602952 623 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AP001052.1-201ENST00000626421 99 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC010132.4-201ENST00000569883 1368 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 OR4C1P-202ENST00000641065 1569 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC078880.4-201ENST00000617627 1749 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 BX322650.1-201ENST00000332359 2143 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 RN7SKP62-201ENST00000384539 329 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 RNU6-233P-201ENST00000410845 141 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AL590128.1-201ENST00000433407 286 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC002486.2-201ENST00000447806 590 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC144530.1-201ENST00000452862 555 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 RN7SKP196-201ENST00000516267 345 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC087273.2-201ENST00000519038 634 ntTSL 3 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC105036.1-201ENST00000566222 271 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 WBP1LP12-201ENST00000604449 331 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC012676.3-201ENST00000614983 479 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC006328.2-201ENST00000623198 397 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC012005.2-201ENST00000624333 397 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 MIR1910-201ENST00000636955 80 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AL121936.2-201ENST00000641935 662 ntBASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDDC3Q8N4P3 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 DYNC1I2P1-201ENST00000435916 1838 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 THAP9-201ENST00000302236 3808 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 BTBD7-208ENST00000555525 2328 ntTSL 5 BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms