Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.73■□□□□ 0.75
TRIM4Q9C037 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM4Q9C037 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM4Q9C037 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM4Q9C037 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM4Q9C037 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM4Q9C037 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM4Q9C037 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM4Q9C037 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM4Q9C037 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM4Q9C037 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM4Q9C037 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM4Q9C037 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 ESRRAP1-201ENST00000400596 1257 ntBASIC19.72■□□□□ 0.75
TRIM4Q9C037 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM4Q9C037 UNC93B4-201ENST00000505679 747 ntBASIC19.72■□□□□ 0.75
TRIM4Q9C037 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM4Q9C037 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM4Q9C037 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TRIM4Q9C037 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.71■□□□□ 0.75
TRIM4Q9C037 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
TRIM4Q9C037 AC090340.1-201ENST00000620778 4980 ntBASIC19.71■□□□□ 0.75
TRIM4Q9C037 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 CNN2P6-201ENST00000439038 900 ntBASIC19.71■□□□□ 0.75
TRIM4Q9C037 EEF1DP3-203ENST00000566025 782 ntBASIC19.71■□□□□ 0.75
TRIM4Q9C037 AC133552.2-202ENST00000575694 574 ntBASIC19.71■□□□□ 0.75
TRIM4Q9C037 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
TRIM4Q9C037 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM4Q9C037 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.71■□□□□ 0.75
TRIM4Q9C037 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM4Q9C037 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.74
TRIM4Q9C037 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRIM4Q9C037 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM4Q9C037 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM4Q9C037 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM4Q9C037 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM4Q9C037 AC092118.2-201ENST00000613495 667 ntBASIC19.7■□□□□ 0.74
TRIM4Q9C037 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM4Q9C037 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM4Q9C037 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 GABARAPL3-202ENST00000624044 1851 ntBASIC19.69■□□□□ 0.74
TRIM4Q9C037 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.69■□□□□ 0.74
TRIM4Q9C037 ECEL1P3-201ENST00000427961 737 ntBASIC19.69■□□□□ 0.74
TRIM4Q9C037 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 AC006058.3-201ENST00000606217 1069 ntBASIC19.69■□□□□ 0.74
TRIM4Q9C037 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 PLK5-205ENST00000642079 1969 ntBASIC19.69■□□□□ 0.74
TRIM4Q9C037 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms