Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
CTC1Q2NKJ3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.31■■□□□ 1
CTC1Q2NKJ3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.31■■□□□ 1
CTC1Q2NKJ3 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTC1Q2NKJ3 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CTC1Q2NKJ3 AL137013.1-201ENST00000432946 1228 ntBASIC21.31■■□□□ 1
CTC1Q2NKJ3 DUX4L26-201ENST00000489078 1255 ntBASIC21.31■■□□□ 1
CTC1Q2NKJ3 FITM1-202ENST00000559294 800 ntBASIC21.31■■□□□ 1
CTC1Q2NKJ3 NTF6B-201ENST00000591913 560 ntBASIC21.31■■□□□ 1
CTC1Q2NKJ3 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CTC1Q2NKJ3 AC010947.1-201ENST00000623454 693 ntBASIC21.31■■□□□ 1
CTC1Q2NKJ3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.31■■□□□ 1
CTC1Q2NKJ3 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTC1Q2NKJ3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTC1Q2NKJ3 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTC1Q2NKJ3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
CTC1Q2NKJ3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CTC1Q2NKJ3 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.31■■□□□ 1
CTC1Q2NKJ3 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.31■■□□□ 1
CTC1Q2NKJ3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTC1Q2NKJ3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CTC1Q2NKJ3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.3■■□□□ 1
CTC1Q2NKJ3 AF106564.1-201ENST00000607058 2553 ntBASIC21.3■■□□□ 1
CTC1Q2NKJ3 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CTC1Q2NKJ3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTC1Q2NKJ3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTC1Q2NKJ3 AC104076.2-201ENST00000448912 469 ntBASIC21.3■■□□□ 1
CTC1Q2NKJ3 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.3■■□□□ 1
CTC1Q2NKJ3 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.3■■□□□ 1
CTC1Q2NKJ3 NAPSB-206ENST00000562112 1266 ntBASIC21.3■■□□□ 1
CTC1Q2NKJ3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CTC1Q2NKJ3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.3■■□□□ 1
CTC1Q2NKJ3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CTC1Q2NKJ3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
CTC1Q2NKJ3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.29■■□□□ 1
CTC1Q2NKJ3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CTC1Q2NKJ3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CTC1Q2NKJ3 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.29■■□□□ 1
CTC1Q2NKJ3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.29■■□□□ 1
CTC1Q2NKJ3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.29■■□□□ 1
CTC1Q2NKJ3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTC1Q2NKJ3 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.29■■□□□ 1
CTC1Q2NKJ3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 SLC25A3P1-201ENST00000443844 931 ntBASIC21.28■■□□□ 1
CTC1Q2NKJ3 AC116562.2-201ENST00000507042 360 ntBASIC21.28■■□□□ 1
CTC1Q2NKJ3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CTC1Q2NKJ3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CTC1Q2NKJ3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 Z98882.1-201ENST00000622160 2253 ntBASIC21.27■■□□□ 1
CTC1Q2NKJ3 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 FEM1AP4-201ENST00000443167 1987 ntBASIC21.27■■□□□ 1
CTC1Q2NKJ3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CTC1Q2NKJ3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 AC023632.3-201ENST00000521633 145 ntBASIC21.27■■□□□ 1
CTC1Q2NKJ3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.27■■□□□ 1
CTC1Q2NKJ3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.27■■□□□ 1
CTC1Q2NKJ3 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CTC1Q2NKJ3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CTC1Q2NKJ3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CTC1Q2NKJ3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CTC1Q2NKJ3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.26■□□□□ 0.99
CTC1Q2NKJ3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms