Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.79■□□□□ 0.76
MSH3P20585 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
MSH3P20585 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.79■□□□□ 0.76
MSH3P20585 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
MSH3P20585 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.79■□□□□ 0.76
MSH3P20585 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.79■□□□□ 0.76
MSH3P20585 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH3P20585 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
MSH3P20585 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
MSH3P20585 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
MSH3P20585 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.78■□□□□ 0.76
MSH3P20585 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
MSH3P20585 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 KRT16P6-202ENST00000425692 1426 ntBASIC19.78■□□□□ 0.76
MSH3P20585 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
MSH3P20585 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.78■□□□□ 0.76
MSH3P20585 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.78■□□□□ 0.76
MSH3P20585 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.78■□□□□ 0.76
MSH3P20585 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.78■□□□□ 0.76
MSH3P20585 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.78■□□□□ 0.76
MSH3P20585 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 UNC93B5-201ENST00000530315 699 ntBASIC19.78■□□□□ 0.76
MSH3P20585 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
MSH3P20585 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.78■□□□□ 0.76
MSH3P20585 SOX15-203ENST00000570788 1093 ntBASIC19.78■□□□□ 0.76
MSH3P20585 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.78■□□□□ 0.76
MSH3P20585 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.78■□□□□ 0.76
MSH3P20585 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH3P20585 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.77■□□□□ 0.76
MSH3P20585 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH3P20585 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH3P20585 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
MSH3P20585 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH3P20585 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH3P20585 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH3P20585 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.77■□□□□ 0.76
MSH3P20585 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH3P20585 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
MSH3P20585 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH3P20585 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.77■□□□□ 0.76
MSH3P20585 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.77■□□□□ 0.76
MSH3P20585 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.77■□□□□ 0.76
MSH3P20585 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.77■□□□□ 0.76
MSH3P20585 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
MSH3P20585 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.77■□□□□ 0.75
MSH3P20585 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH3P20585 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH3P20585 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH3P20585 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
MSH3P20585 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH3P20585 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH3P20585 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH3P20585 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.76■□□□□ 0.75
MSH3P20585 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.76■□□□□ 0.75
MSH3P20585 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.76■□□□□ 0.75
MSH3P20585 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
MSH3P20585 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH3P20585 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH3P20585 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.75■□□□□ 0.75
MSH3P20585 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.75■□□□□ 0.75
MSH3P20585 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.75■□□□□ 0.75
MSH3P20585 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
MSH3P20585 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.75■□□□□ 0.75
MSH3P20585 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.75■□□□□ 0.75
MSH3P20585 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
MSH3P20585 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.75■□□□□ 0.75
MSH3P20585 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms