Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 RN7SKP85-201ENST00000411349 318 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC091982.1-202ENST00000473923 343 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 RN7SL306P-201ENST00000492941 296 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC147055.1-201ENST00000509261 750 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC114940.1-201ENST00000512162 1265 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 RN7SKP233-201ENST00000517005 110 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 RPS20-202ENST00000518875 671 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 IGHVIII-25-1-201ENST00000522143 241 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 HMGN1P26-201ENST00000558737 303 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AL031846.1-201ENST00000560933 314 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 RN7SL426P-201ENST00000579106 295 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC100832.2-201ENST00000582080 776 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 C10orf82-203ENST00000588184 852 ntAPPRIS ALT2 TSL 3 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC012065.3-201ENST00000602736 439 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AC092032.1-201ENST00000603090 165 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AP003400.2-201ENST00000624036 666 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 OGFOD1P1-201ENST00000447552 1592 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 EEF1A1P20-201ENST00000514852 1386 ntBASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC8.34□□□□□ -1.07
CHMP4CQ96CF2 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC8.34□□□□□ -1.08
CHMP4CQ96CF2 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 OR10D3-201ENST00000318666 1030 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 RN7SKP107-201ENST00000364157 290 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 MIR152-201ENST00000385212 87 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 VN1R66P-201ENST00000412929 916 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 EIF4A1P5-201ENST00000428062 1095 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AC011742.2-201ENST00000443818 352 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 SDHCP3-201ENST00000445371 506 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 SNORA81.1-201ENST00000458922 177 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AC079193.1-201ENST00000460497 588 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AP000805.1-201ENST00000471604 784 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 SNORD116-30-201ENST00000516468 85 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 RBMS2P1-201ENST00000525031 1226 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AC078878.1-201ENST00000539832 958 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 FCF1-203ENST00000553615 954 ntTSL 3 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AC006453.3-201ENST00000635891 377 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 AC090774.4-201ENST00000578888 1372 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 OR2A3P-202ENST00000641249 1776 ntBASIC8.33□□□□□ -1.08
CHMP4CQ96CF2 MR1-209ENST00000617803 7584 ntTSL 5 BASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 RAD17P2-201ENST00000451754 1977 ntBASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4CQ96CF2 RBMY1A3P-201ENST00000382670 1404 ntBASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms