Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TRIM53CP-201ENST00000531490 1354 ntBASIC6.42□□□□□ -1.38
SOX3P41225 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX3P41225 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.42□□□□□ -1.38
SOX3P41225 RBMY1A3P-201ENST00000382670 1404 ntBASIC6.42□□□□□ -1.38
SOX3P41225 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.42□□□□□ -1.38
SOX3P41225 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
SOX3P41225 AL136531.3-201ENST00000624378 3658 ntBASIC6.41□□□□□ -1.38
SOX3P41225 CENPL-203ENST00000367710 1771 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 AC009220.2-201ENST00000489759 1751 ntBASIC6.41□□□□□ -1.38
SOX3P41225 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 AC104837.1-201ENST00000444644 1587 ntBASIC6.41□□□□□ -1.38
SOX3P41225 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX3P41225 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX3P41225 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX3P41225 RN7SKP62-201ENST00000384539 329 ntBASIC6.41□□□□□ -1.38
SOX3P41225 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 AL672212.1-201ENST00000422246 400 ntBASIC6.41□□□□□ -1.38
SOX3P41225 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 BMS1P11-201ENST00000442351 885 ntBASIC6.41□□□□□ -1.38
SOX3P41225 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC6.41□□□□□ -1.38
SOX3P41225 AL354714.5-201ENST00000450131 590 ntBASIC6.41□□□□□ -1.38
SOX3P41225 BMS1P9-201ENST00000457640 885 ntBASIC6.41□□□□□ -1.38
SOX3P41225 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 AC068522.1-201ENST00000482895 345 ntBASIC6.41□□□□□ -1.38
SOX3P41225 AC026826.1-201ENST00000493002 361 ntBASIC6.41□□□□□ -1.38
SOX3P41225 AC253576.1-201ENST00000511645 1156 ntBASIC6.41□□□□□ -1.38
SOX3P41225 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC6.41□□□□□ -1.38
SOX3P41225 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC6.41□□□□□ -1.38
SOX3P41225 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 AC007537.1-201ENST00000539347 327 ntBASIC6.41□□□□□ -1.38
SOX3P41225 AC027667.1-201ENST00000545814 304 ntBASIC6.41□□□□□ -1.38
SOX3P41225 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC6.41□□□□□ -1.38
SOX3P41225 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
SOX3P41225 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX3P41225 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX3P41225 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX3P41225 WBP11P1-201ENST00000562560 1931 ntBASIC6.4□□□□□ -1.38
SOX3P41225 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC6.4□□□□□ -1.38
SOX3P41225 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.4□□□□□ -1.38
SOX3P41225 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
SOX3P41225 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.4□□□□□ -1.38
SOX3P41225 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
SOX3P41225 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.4□□□□□ -1.38
SOX3P41225 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SOX3P41225 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.4□□□□□ -1.38
SOX3P41225 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 EIF4A1P2-201ENST00000422633 1220 ntBASIC6.4□□□□□ -1.38
SOX3P41225 DUTP4-201ENST00000424782 475 ntBASIC6.4□□□□□ -1.38
SOX3P41225 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 LINC01221-201ENST00000432488 662 ntTSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC6.4□□□□□ -1.38
SOX3P41225 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC6.4□□□□□ -1.38
SOX3P41225 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC6.4□□□□□ -1.38
SOX3P41225 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 RN7SL259P-201ENST00000478499 253 ntBASIC6.4□□□□□ -1.38
SOX3P41225 RN7SL267P-201ENST00000485107 261 ntBASIC6.4□□□□□ -1.38
SOX3P41225 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC6.4□□□□□ -1.38
SOX3P41225 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.4□□□□□ -1.38
SOX3P41225 MIR5095-201ENST00000578844 88 ntBASIC6.4□□□□□ -1.38
SOX3P41225 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 AC015818.6-201ENST00000584274 634 ntBASIC6.4□□□□□ -1.38
SOX3P41225 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC6.4□□□□□ -1.38
SOX3P41225 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC6.4□□□□□ -1.38
SOX3P41225 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC6.4□□□□□ -1.38
SOX3P41225 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC6.4□□□□□ -1.38
SOX3P41225 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
SOX3P41225 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.4□□□□□ -1.39
SOX3P41225 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms