Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RN7SKP189-201ENST00000365042 330 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AL079341.1-201ENST00000404701 1207 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 RN7SKP91-201ENST00000410852 288 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 THEM7P-201ENST00000419556 672 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AL445193.2-201ENST00000419596 620 ntTSL 3 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AL139184.1-202ENST00000422303 222 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AC092601.1-201ENST00000444526 383 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 OR51P1P-201ENST00000447547 942 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AC016724.1-201ENST00000453215 421 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 RPS26P11-201ENST00000463445 348 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 UOX-201ENST00000471089 899 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 PGBD4P1-201ENST00000473644 407 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 RPS26P6-201ENST00000475156 348 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 MARK2P8-201ENST00000476069 952 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 RN7SL568P-201ENST00000493069 298 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 IGLVV-66-201ENST00000523818 341 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 OR4A1P-201ENST00000532342 920 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AC121758.1-202ENST00000556917 658 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 OR4C49P-201ENST00000563891 900 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 RPL7AP69-201ENST00000595306 806 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AL137000.1-201ENST00000610528 1244 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AL034408.1-201ENST00000637712 664 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 MED6-212ENST00000615788 1700 ntTSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AC095038.1-201ENST00000429248 1591 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AP002800.1-201ENST00000624982 2225 ntBASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC7.02□□□□□ -1.28
HDDC3Q8N4P3 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AC011008.2-201ENST00000624866 3352 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RN7SKP171-201ENST00000364417 303 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RN7SKP191-201ENST00000364713 306 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RN7SKP269-201ENST00000365545 319 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RBMY2HP-201ENST00000457961 720 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RPL34P34-201ENST00000465389 354 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RN7SL160P-201ENST00000468558 284 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AC015524.1-201ENST00000491585 472 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 B3GNTL1P1-201ENST00000509174 289 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 IGKV2D-38-201ENST00000518423 240 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 MELK-208ENST00000536987 2125 ntTSL 2 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 MIR3135A-201ENST00000578460 77 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RPS4XP21-201ENST00000603814 750 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 NDUFB9P1-201ENST00000604683 510 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 MIR6861-201ENST00000618657 64 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AC005858.3-201ENST00000624756 589 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 AC073857.1-201ENST00000625082 1054 ntBASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms