Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OR7E25P-201ENST00000344844 931 ntBASIC11.07□□□□□ -0.64
CUX1P39880 MIR130B-202ENST00000385018 82 ntBASIC11.07□□□□□ -0.64
CUX1P39880 AL663061.1-201ENST00000416625 580 ntBASIC11.07□□□□□ -0.64
CUX1P39880 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC11.07□□□□□ -0.64
CUX1P39880 EMC3-AS1-205ENST00000438698 534 ntBASIC11.07□□□□□ -0.64
CUX1P39880 AC006978.2-201ENST00000442800 666 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
CUX1P39880 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC11.07□□□□□ -0.64
CUX1P39880 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC11.07□□□□□ -0.64
CUX1P39880 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC11.07□□□□□ -0.64
CUX1P39880 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC11.07□□□□□ -0.64
CUX1P39880 FAM72A-208ENST00000607379 1139 ntBASIC11.07□□□□□ -0.64
CUX1P39880 AC034229.6-201ENST00000623704 224 ntBASIC11.07□□□□□ -0.64
CUX1P39880 LPAL2-203ENST00000454031 2498 ntBASIC11.07□□□□□ -0.64
CUX1P39880 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 AL359396.1-201ENST00000623151 2376 ntBASIC11.07□□□□□ -0.64
CUX1P39880 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC11.07□□□□□ -0.64
CUX1P39880 KIAA0930-202ENST00000336156 8119 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 LINC01748-202ENST00000634281 2864 ntTSL 5 BASIC11.07□□□□□ -0.64
CUX1P39880 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC11.07□□□□□ -0.64
CUX1P39880 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 TNFAIP8-204ENST00000503646 2502 ntTSL 2 BASIC11.07□□□□□ -0.64
CUX1P39880 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
CUX1P39880 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC11.06□□□□□ -0.64
CUX1P39880 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
CUX1P39880 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 ZNF711-203ENST00000373165 4124 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 EEF1A1P9-201ENST00000514975 1383 ntBASIC11.06□□□□□ -0.64
CUX1P39880 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC11.06□□□□□ -0.64
CUX1P39880 PAX6-282ENST00000640975 2553 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
CUX1P39880 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC11.06□□□□□ -0.64
CUX1P39880 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
CUX1P39880 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC11.06□□□□□ -0.64
CUX1P39880 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 ABCC5-205ENST00000427120 4697 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC11.06□□□□□ -0.64
CUX1P39880 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC11.06□□□□□ -0.64
CUX1P39880 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC11.06□□□□□ -0.64
CUX1P39880 AC010240.2-201ENST00000445363 1205 ntBASIC11.06□□□□□ -0.64
CUX1P39880 ZRANB2-AS1-202ENST00000450461 553 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC11.06□□□□□ -0.64
CUX1P39880 RN7SL369P-201ENST00000477138 299 ntBASIC11.06□□□□□ -0.64
CUX1P39880 RN7SL382P-201ENST00000482631 282 ntBASIC11.06□□□□□ -0.64
CUX1P39880 AP002453.1-201ENST00000492327 668 ntBASIC11.06□□□□□ -0.64
CUX1P39880 AC006499.4-201ENST00000510947 694 ntBASIC11.06□□□□□ -0.64
CUX1P39880 AC108103.1-201ENST00000511286 446 ntBASIC11.06□□□□□ -0.64
CUX1P39880 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC11.06□□□□□ -0.64
CUX1P39880 RNA5SP340-201ENST00000517132 107 ntBASIC11.06□□□□□ -0.64
CUX1P39880 AC027369.2-201ENST00000528030 440 ntBASIC11.06□□□□□ -0.64
CUX1P39880 AL356986.1-201ENST00000604085 341 ntBASIC11.06□□□□□ -0.64
CUX1P39880 AL157899.1-201ENST00000604110 936 ntBASIC11.06□□□□□ -0.64
CUX1P39880 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC11.06□□□□□ -0.64
CUX1P39880 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC11.06□□□□□ -0.64
CUX1P39880 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 FLNB-212ENST00000490882 8079 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 LSAMP-205ENST00000490035 9446 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 HEATR4-202ENST00000553558 3523 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
CUX1P39880 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 AC016705.2-202ENST00000559008 6878 ntTSL 3 BASIC11.06□□□□□ -0.64
CUX1P39880 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
CUX1P39880 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC11.06□□□□□ -0.64
CUX1P39880 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC11.06□□□□□ -0.64
CUX1P39880 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 CUX1-201ENST00000292535 13747 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
CUX1P39880 NPL-212ENST00000614468 2376 ntTSL 5 BASIC11.05□□□□□ -0.64
CUX1P39880 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 LRRC37A-202ENST00000393465 4997 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
CUX1P39880 ALG13-201ENST00000251943 3997 ntTSL 2 BASIC11.05□□□□□ -0.64
CUX1P39880 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
CUX1P39880 CDY8P-201ENST00000428380 1279 ntBASIC11.05□□□□□ -0.64
CUX1P39880 CDY20P-201ENST00000447528 1279 ntBASIC11.05□□□□□ -0.64
CUX1P39880 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC11.05□□□□□ -0.64
CUX1P39880 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC11.05□□□□□ -0.64
CUX1P39880 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC11.05□□□□□ -0.64
CUX1P39880 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC11.05□□□□□ -0.64
CUX1P39880 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC11.05□□□□□ -0.64
CUX1P39880 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC11.05□□□□□ -0.64
CUX1P39880 CDY10P-201ENST00000452415 1567 ntBASIC11.05□□□□□ -0.64
CUX1P39880 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 SCAND2P-201ENST00000348993 8975 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 AC091544.5-201ENST00000620192 3815 ntBASIC11.05□□□□□ -0.64
CUX1P39880 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 OR8B9P-202ENST00000642028 5216 ntBASIC11.05□□□□□ -0.64
CUX1P39880 BTBD3-214ENST00000618296 4582 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 AF121897.1-201ENST00000411867 3980 ntBASIC11.05□□□□□ -0.64
CUX1P39880 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC11.05□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms