Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AC087821.1-201ENST00000623639 567 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 HBG1-202ENST00000632727 369 ntTSL 3 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 OR5AU1-204ENST00000641822 1197 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 TNPO1P2-201ENST00000426249 2665 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AL356361.1-201ENST00000400943 1459 ntBASIC6.02□□□□□ -1.44
NKX3-1Q99801 TRDMT1-210ENST00000488990 1301 ntTSL 2 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 PWRN1-212ENST00000569908 1435 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 IGBP1-AS2-201ENST00000403371 513 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 CLIC4P3-201ENST00000422221 752 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 AL645936.2-201ENST00000430565 928 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 VDAC2P3-201ENST00000430995 828 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 GTF2F2P2-201ENST00000445825 721 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC055758.2-201ENST00000495382 799 ntTSL 2 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 CHCHD2P7-201ENST00000508008 452 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 MTCO3P42-201ENST00000509488 518 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 MTCO3P39-201ENST00000514812 518 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC087257.2-201ENST00000538759 928 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC233290.1-201ENST00000553021 1186 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 ONECUT1-202ENST00000560699 996 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 MED31-202ENST00000574128 619 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 RN7SL689P-201ENST00000577215 297 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC009950.1-209ENST00000595586 777 ntTSL 5 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AC020765.1-201ENST00000604296 328 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AL512356.3-201ENST00000623005 461 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 MAPK10-344ENST00000641718 3746 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
NKX3-1Q99801 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 CYP2G2P-201ENST00000594920 1485 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 AL033543.1-201ENST00000623440 13454 ntBASIC6.02□□□□□ -1.45
NKX3-1Q99801 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.02□□□□□ -1.45
NKX3-1Q99801 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC093278.2-201ENST00000564956 2485 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 TOMM7-202ENST00000372879 514 ntTSL 4 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 C21orf140-201ENST00000410005 756 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 RN7SKP30-201ENST00000411373 334 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 DUTP4-201ENST00000424782 475 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC239800.1-201ENST00000442049 719 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 CEACAMP3-202ENST00000483806 638 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC026826.1-201ENST00000493002 361 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 MRPL49P1-201ENST00000505951 535 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 OR10J9P-201ENST00000511932 987 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC078860.1-201ENST00000546601 527 ntTSL 2 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC090527.1-201ENST00000557965 431 ntTSL 3 BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms