Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 CDY10P-201ENST00000452415 1567 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 IFNA16-201ENST00000380216 939 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 TYMSP1-201ENST00000407851 869 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AL354794.2-201ENST00000424795 1248 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 FDPSP1-201ENST00000424976 1071 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 RN7SL325P-201ENST00000460434 283 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 RN7SL180P-201ENST00000466769 294 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 AL928654.1-201ENST00000476081 354 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 RPL5P11-201ENST00000498068 893 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC112225.1-201ENST00000508230 297 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC027315.1-201ENST00000511592 469 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC007611.1-202ENST00000564212 854 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 RPS7P1-201ENST00000571702 585 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC024614.1-201ENST00000577546 307 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 ZNF525-206ENST00000593918 590 ntTSL 5 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AP001554.1-201ENST00000604533 376 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 AL136139.1-201ENST00000605568 222 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 IFNA5-201ENST00000610521 987 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 FKBP1AP4-201ENST00000631775 336 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.84□□□□□ -1.32
VMP1Q96GC9 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.84□□□□□ -1.32
VMP1Q96GC9 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
VMP1Q96GC9 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
VMP1Q96GC9 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.84□□□□□ -1.32
VMP1Q96GC9 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC6.84□□□□□ -1.32
VMP1Q96GC9 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
VMP1Q96GC9 AC007993.1-201ENST00000621298 2430 ntBASIC6.84□□□□□ -1.32
VMP1Q96GC9 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 GTF2IP4-201ENST00000453092 2054 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 CR383656.5-201ENST00000547616 1340 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 HOPX-204ENST00000381260 1141 ntTSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 CBX1P3-201ENST00000413296 527 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 OR7E117P-201ENST00000422682 1112 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 OR5P4P-201ENST00000424698 917 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 AL731892.1-201ENST00000437364 1192 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 PMS2P11-201ENST00000451831 574 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 DPH5-211ENST00000488176 1034 ntAPPRIS P4 TSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 USP9YP2-201ENST00000504503 1000 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 AC010409.2-201ENST00000505780 478 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 OR7E163P-201ENST00000505943 894 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 USP9YP1-201ENST00000513521 1002 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 ATP5J2P4-201ENST00000538774 267 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 AC061975.3-201ENST00000583209 244 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 AC125494.2-201ENST00000602431 657 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 AL137246.1-201ENST00000607072 977 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 AL590396.3-201ENST00000636334 300 ntBASIC6.83□□□□□ -1.32
VMP1Q96GC9 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VMP1Q96GC9 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.83□□□□□ -1.32
VMP1Q96GC9 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms