Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 BBS9-203ENST00000355070 4004 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.63
CUX1P39880 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CUX1P39880 KIF13A-204ENST00000378826 5747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CUX1P39880 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC11.13□□□□□ -0.63
CUX1P39880 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC11.13□□□□□ -0.63
CUX1P39880 ZHX3-214ENST00000559234 6296 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CUX1P39880 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC11.13□□□□□ -0.63
CUX1P39880 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CUX1P39880 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
CUX1P39880 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CUX1P39880 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC11.13□□□□□ -0.63
CUX1P39880 NRIR-201ENST00000366140 799 ntTSL 3 BASIC11.13□□□□□ -0.63
CUX1P39880 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC11.13□□□□□ -0.63
CUX1P39880 RPL23AP85-201ENST00000421838 433 ntBASIC11.13□□□□□ -0.63
CUX1P39880 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC11.13□□□□□ -0.63
CUX1P39880 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC11.13□□□□□ -0.63
CUX1P39880 VPS25P1-201ENST00000455691 508 ntBASIC11.13□□□□□ -0.63
CUX1P39880 RPL19P11-201ENST00000495944 589 ntBASIC11.13□□□□□ -0.63
CUX1P39880 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC11.13□□□□□ -0.63
CUX1P39880 AC011411.1-201ENST00000509592 876 ntBASIC11.13□□□□□ -0.63
CUX1P39880 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC11.13□□□□□ -0.63
CUX1P39880 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC11.13□□□□□ -0.63
CUX1P39880 RUNX1T1-252ENST00000617740 7627 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.63
CUX1P39880 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CUX1P39880 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CUX1P39880 LINC01105-203ENST00000431188 3329 ntTSL 5 BASIC11.12□□□□□ -0.63
CUX1P39880 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 PHF2P2-202ENST00000444553 2865 ntBASIC11.12□□□□□ -0.63
CUX1P39880 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC11.12□□□□□ -0.63
CUX1P39880 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 FAM20A-207ENST00000619787 2798 ntTSL 5 BASIC11.12□□□□□ -0.63
CUX1P39880 CTNNA2-209ENST00000466387 4349 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CUX1P39880 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 AC006213.1-202ENST00000589021 2176 ntTSL 2 BASIC11.12□□□□□ -0.63
CUX1P39880 AL031985.1-201ENST00000392713 418 ntBASIC11.12□□□□□ -0.63
CUX1P39880 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC11.12□□□□□ -0.63
CUX1P39880 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC11.12□□□□□ -0.63
CUX1P39880 CDY17P-201ENST00000414121 1282 ntBASIC11.12□□□□□ -0.63
CUX1P39880 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC11.12□□□□□ -0.63
CUX1P39880 RPL7P51-201ENST00000490532 749 ntBASIC11.12□□□□□ -0.63
CUX1P39880 PABPC1P1-201ENST00000506347 591 ntBASIC11.12□□□□□ -0.63
CUX1P39880 NPIPB14P-203ENST00000532298 987 ntBASIC11.12□□□□□ -0.63
CUX1P39880 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC11.12□□□□□ -0.63
CUX1P39880 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC11.12□□□□□ -0.63
CUX1P39880 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC11.12□□□□□ -0.63
CUX1P39880 GTF2IP6-201ENST00000583143 541 ntBASIC11.12□□□□□ -0.63
CUX1P39880 AC129915.3-201ENST00000634128 948 ntBASIC11.12□□□□□ -0.63
CUX1P39880 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 ST7-203ENST00000393443 2360 ntTSL 2 BASIC11.12□□□□□ -0.63
CUX1P39880 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 STAMBP-203ENST00000394073 6386 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CUX1P39880 CCRL2-201ENST00000357392 1593 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 AMBN-203ENST00000613447 1997 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
CUX1P39880 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 COX6B1P3-201ENST00000312310 260 ntBASIC11.11□□□□□ -0.63
CUX1P39880 PLGLB2-201ENST00000359481 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC11.11□□□□□ -0.63
CUX1P39880 AC073987.1-201ENST00000422683 638 ntTSL 3 BASIC11.11□□□□□ -0.63
CUX1P39880 AC239367.3-201ENST00000428996 814 ntBASIC11.11□□□□□ -0.63
CUX1P39880 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC11.11□□□□□ -0.63
CUX1P39880 AC087575.1-201ENST00000585087 229 ntBASIC11.11□□□□□ -0.63
CUX1P39880 AC010976.1-205ENST00000596439 1007 ntTSL 5 BASIC11.11□□□□□ -0.63
CUX1P39880 AC092266.1-201ENST00000610958 165 ntBASIC11.11□□□□□ -0.63
CUX1P39880 AC004801.6-201ENST00000616571 978 ntBASIC11.11□□□□□ -0.63
CUX1P39880 AC026124.2-201ENST00000621847 656 ntBASIC11.11□□□□□ -0.63
CUX1P39880 AC103703.1-201ENST00000634783 663 ntBASIC11.11□□□□□ -0.63
CUX1P39880 AL355306.2-203ENST00000635102 1025 ntTSL 5 BASIC11.11□□□□□ -0.63
CUX1P39880 LINC02495-203ENST00000636704 242 ntBASIC11.11□□□□□ -0.63
CUX1P39880 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
CUX1P39880 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC11.11□□□□□ -0.63
CUX1P39880 AC087392.3-202ENST00000358446 1754 ntBASIC11.11□□□□□ -0.63
CUX1P39880 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC11.11□□□□□ -0.63
CUX1P39880 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
CUX1P39880 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC11.11□□□□□ -0.63
CUX1P39880 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC11.11□□□□□ -0.63
CUX1P39880 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CUX1P39880 CNR2-201ENST00000374472 5254 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CUX1P39880 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
CUX1P39880 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC11.1□□□□□ -0.63
CUX1P39880 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CUX1P39880 AL590004.3-202ENST00000445883 451 ntBASIC11.1□□□□□ -0.63
CUX1P39880 CEACAMP5-201ENST00000448037 961 ntBASIC11.1□□□□□ -0.63
CUX1P39880 PPIAP27-201ENST00000453800 265 ntBASIC11.1□□□□□ -0.63
CUX1P39880 RBBP4P1-201ENST00000502424 1276 ntBASIC11.1□□□□□ -0.63
CUX1P39880 AC079905.1-201ENST00000549280 475 ntBASIC11.1□□□□□ -0.63
CUX1P39880 AL591767.3-201ENST00000554632 525 ntBASIC11.1□□□□□ -0.63
CUX1P39880 AC004232.1-201ENST00000571388 208 ntBASIC11.1□□□□□ -0.63
CUX1P39880 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC11.1□□□□□ -0.63
CUX1P39880 AC008507.3-201ENST00000585753 472 ntBASIC11.1□□□□□ -0.63
CUX1P39880 AC120057.5-201ENST00000623840 154 ntBASIC11.1□□□□□ -0.63
CUX1P39880 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms