Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC8.55□□□□□ -1.04
HMGB1P09429 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 MKI67P1-201ENST00000604297 1460 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC8.55□□□□□ -1.04
HMGB1P09429 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC8.55□□□□□ -1.04
HMGB1P09429 DCLRE1C-211ENST00000396817 2761 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 NBPF8-201ENST00000583271 5330 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 MTCO1P7-201ENST00000419523 1542 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC8.54□□□□□ -1.04
HMGB1P09429 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC8.54□□□□□ -1.04
HMGB1P09429 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC8.54□□□□□ -1.04
HMGB1P09429 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC8.54□□□□□ -1.04
HMGB1P09429 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 RGS2-201ENST00000235382 1354 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 LRP12-201ENST00000276654 4112 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
HMGB1P09429 SNORA30B-201ENST00000365319 129 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 RPS20P25-201ENST00000412447 352 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 AL627308.2-201ENST00000420014 432 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 GLUD1P9-201ENST00000420997 1173 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC8.54□□□□□ -1.04
HMGB1P09429 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC8.54□□□□□ -1.04
HMGB1P09429 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC8.54□□□□□ -1.04
HMGB1P09429 G6PC2-204ENST00000429379 645 ntTSL 2 BASIC8.54□□□□□ -1.04
HMGB1P09429 AC016396.1-201ENST00000440189 328 ntTSL 3 BASIC8.54□□□□□ -1.04
HMGB1P09429 BUD31P2-201ENST00000449374 300 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 AC078788.2-201ENST00000462300 382 ntTSL 3 BASIC8.54□□□□□ -1.04
HMGB1P09429 RN7SL91P-201ENST00000469313 291 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 RN7SL88P-201ENST00000480166 299 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 RN7SL797P-201ENST00000486314 297 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 AC016559.1-201ENST00000511420 199 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 AC022679.2-201ENST00000522186 813 ntTSL 2 BASIC8.54□□□□□ -1.04
HMGB1P09429 AC018523.1-201ENST00000534211 512 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 AC068790.1-201ENST00000536166 355 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC8.54□□□□□ -1.04
HMGB1P09429 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC8.54□□□□□ -1.04
HMGB1P09429 AC092718.4-201ENST00000566639 716 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC8.54□□□□□ -1.04
HMGB1P09429 RN7SL667P-201ENST00000582817 298 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC8.54□□□□□ -1.04
HMGB1P09429 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC8.54□□□□□ -1.04
HMGB1P09429 MAPK10-261ENST00000641050 3109 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 AC132219.2-201ENST00000624416 2327 ntBASIC8.54□□□□□ -1.04
HMGB1P09429 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC8.54□□□□□ -1.04
HMGB1P09429 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC8.53□□□□□ -1.04
HMGB1P09429 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC8.53□□□□□ -1.04
HMGB1P09429 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC8.53□□□□□ -1.04
HMGB1P09429 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC8.53□□□□□ -1.04
HMGB1P09429 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 Y_RNA.209-201ENST00000364156 111 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC8.53□□□□□ -1.04
HMGB1P09429 C21orf140-201ENST00000410005 756 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
HMGB1P09429 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC8.53□□□□□ -1.04
HMGB1P09429 UQCRHP1-204ENST00000424609 274 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC8.53□□□□□ -1.04
HMGB1P09429 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
HMGB1P09429 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC8.53□□□□□ -1.04
HMGB1P09429 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 RN7SL182P-201ENST00000496499 300 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 RN7SL775P-201ENST00000498361 336 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 LINC01085-203ENST00000511195 326 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 PGAM4P2-201ENST00000512491 721 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 TPT1-AS1-214ENST00000521507 665 ntTSL 5 BASIC8.53□□□□□ -1.04
HMGB1P09429 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
HMGB1P09429 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC8.53□□□□□ -1.04
HMGB1P09429 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
HMGB1P09429 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC8.53□□□□□ -1.04
HMGB1P09429 AC243312.1-201ENST00000570582 275 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC8.53□□□□□ -1.04
HMGB1P09429 RPSAP66-201ENST00000592196 606 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC8.53□□□□□ -1.04
HMGB1P09429 AC007785.3-202ENST00000601033 518 ntTSL 3 BASIC8.53□□□□□ -1.04
HMGB1P09429 PRR13P3-201ENST00000603578 376 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 RN7SL778P-201ENST00000607160 297 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 AC093635.1-201ENST00000609028 555 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 AC004241.3-201ENST00000611728 517 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC8.53□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms