Protein–RNA interactions for Protein: P25808

SPB4, ATP-dependent rRNA helicase SPB4, yeastyeast

Predicted RBP Predictions only

Length 606 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SPB4P25808 SIP4YJL089W 2490 nt1.65□□□□□ -2.15
SPB4P25808 NIP1YMR309C 2439 nt1.64□□□□□ -2.15
SPB4P25808 IML1YJR138W 4755 nt1.63□□□□□ -2.15
SPB4P25808 YNL054W-BYNL054W-B 5250 nt1.62□□□□□ -2.15
SPB4P25808 SCC2YDR180W 4482 nt1.61□□□□□ -2.15
SPB4P25808 FIG2YCR089W 4830 nt1.61□□□□□ -2.15
SPB4P25808 snR64snR64 101 nt1.57□□□□□ -2.16
SPB4P25808 PAU12YGR294W 363 nt1.55□□□□□ -2.16
SPB4P25808 IQG1YPL242C 4488 nt1.53□□□□□ -2.16
SPB4P25808 tH(GUG)E1tH(GUG)E1 72 nt1.51□□□□□ -2.17
SPB4P25808 tH(GUG)E2tH(GUG)E2 72 nt1.51□□□□□ -2.17
SPB4P25808 tH(GUG)G1tH(GUG)G1 72 nt1.51□□□□□ -2.17
SPB4P25808 tH(GUG)G2tH(GUG)G2 72 nt1.51□□□□□ -2.17
SPB4P25808 tH(GUG)HtH(GUG)H 72 nt1.51□□□□□ -2.17
SPB4P25808 tH(GUG)KtH(GUG)K 72 nt1.51□□□□□ -2.17
SPB4P25808 tH(GUG)MtH(GUG)M 72 nt1.51□□□□□ -2.17
SPB4P25808 MLP2YIL149C 5040 nt1.5□□□□□ -2.17
SPB4P25808 YML054C-AYML054C-A 159 nt1.47□□□□□ -2.17
SPB4P25808 YNL284C-BYNL284C-B 5268 nt1.46□□□□□ -2.18
SPB4P25808 YHR180C-BYHR180C-B 105 nt1.45□□□□□ -2.18
SPB4P25808 YKL225WYKL225W 348 nt1.44□□□□□ -2.18
SPB4P25808 YBR109W-AYBR109W-A 225 nt1.44□□□□□ -2.18
SPB4P25808 DOP1YDR141C 5097 nt1.43□□□□□ -2.18
SPB4P25808 RKR1YMR247C 4689 nt1.43□□□□□ -2.18
SPB4P25808 YBR296C-AYBR296C-A 120 nt1.4□□□□□ -2.19
SPB4P25808 tV(UAC)BtV(UAC)B 74 nt1.39□□□□□ -2.19
SPB4P25808 tV(UAC)DtV(UAC)D 74 nt1.39□□□□□ -2.19
SPB4P25808 YJR029WYJR029W 5268 nt1.38□□□□□ -2.19
SPB4P25808 tQ(UUG)QtQ(UUG)Q 76 nt1.38□□□□□ -2.19
SPB4P25808 RPL41AYDL184C 78 nt1.37□□□□□ -2.19
SPB4P25808 YER090C-AYER090C-A 90 nt1.36□□□□□ -2.19
SPB4P25808 PAU24YBR301W 363 nt1.35□□□□□ -2.19
SPB4P25808 YDR371C-AYDR371C-A 105 nt1.34□□□□□ -2.19
SPB4P25808 BEM2YER155C 6504 nt1.33□□□□□ -2.2
SPB4P25808 MLP1YKR095W 5628 nt1.33□□□□□ -2.2
SPB4P25808 PET111YMR257C 2403 nt1.32□□□□□ -2.2
SPB4P25808 YOR192C-BYOR192C-B 5313 nt1.31□□□□□ -2.2
SPB4P25808 snR38snR38 95 nt1.31□□□□□ -2.2
SPB4P25808 VAM6YDL077C 3150 nt1.31□□□□□ -2.2
SPB4P25808 BUD3YCL014W 4911 nt1.31□□□□□ -2.2
SPB4P25808 snR50snR50 90 nt1.28□□□□□ -2.2
SPB4P25808 YBL100W-BYBL100W-B 5313 nt1.27□□□□□ -2.21
SPB4P25808 AI1Q0050 2505 nt1.25□□□□□ -2.21
SPB4P25808 YPR137C-BYPR137C-B 5268 nt1.24□□□□□ -2.21
SPB4P25808 EMT1tM(CAU)D 73 nt1.22□□□□□ -2.21
SPB4P25808 EMT5tM(CAU)J1 73 nt1.22□□□□□ -2.21
SPB4P25808 EMT3tM(CAU)J2 73 nt1.22□□□□□ -2.21
SPB4P25808 EMT4tM(CAU)M 73 nt1.22□□□□□ -2.21
SPB4P25808 EMT2tM(CAU)O2 73 nt1.22□□□□□ -2.21
SPB4P25808 UTP20YBL004W 7482 nt1.21□□□□□ -2.22
SPB4P25808 tF(GAA)BtF(GAA)B 73 nt1.13□□□□□ -2.23
SPB4P25808 tF(GAA)FtF(GAA)F 73 nt1.13□□□□□ -2.23
SPB4P25808 tF(GAA)GtF(GAA)G 73 nt1.13□□□□□ -2.23
SPB4P25808 tF(GAA)H1tF(GAA)H1 73 nt1.13□□□□□ -2.23
SPB4P25808 tF(GAA)H2tF(GAA)H2 73 nt1.13□□□□□ -2.23
SPB4P25808 tF(GAA)MtF(GAA)M 73 nt1.13□□□□□ -2.23
SPB4P25808 tF(GAA)P1tF(GAA)P1 73 nt1.13□□□□□ -2.23
SPB4P25808 tF(GAA)P2tF(GAA)P2 73 nt1.13□□□□□ -2.23
SPB4P25808 snR67snR67 82 nt1.11□□□□□ -2.23
SPB4P25808 SKI7YOR076C 2244 nt1.06□□□□□ -2.24
SPB4P25808 YMR160WYMR160W 2451 nt1.02□□□□□ -2.25
SPB4P25808 YOR186C-AYOR186C-A 210 nt1□□□□□ -2.25
SPB4P25808 YLR149C-AYLR149C-A 87 nt0.99□□□□□ -2.25
SPB4P25808 YDL159W-AYDL159W-A 132 nt0.94□□□□□ -2.26
SPB4P25808 YOL014WYOL014W 375 nt0.94□□□□□ -2.26
SPB4P25808 ESP1YGR098C 4893 nt0.94□□□□□ -2.26
SPB4P25808 YPR159C-AYPR159C-A 102 nt0.93□□□□□ -2.26
SPB4P25808 YGR122C-AYGR122C-A 129 nt0.9□□□□□ -2.27
SPB4P25808 YKL096C-BYKL096C-B 150 nt0.89□□□□□ -2.27
SPB4P25808 tT(AGU)BtT(AGU)B 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)CtT(AGU)C 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)DtT(AGU)D 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)HtT(AGU)H 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)I1tT(AGU)I1 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)I2tT(AGU)I2 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)JtT(AGU)J 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)N1tT(AGU)N1 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)N2tT(AGU)N2 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)O1tT(AGU)O1 73 nt0.87□□□□□ -2.27
SPB4P25808 tT(AGU)O2tT(AGU)O2 73 nt0.87□□□□□ -2.27
SPB4P25808 YKL145W-AYKL145W-A 93 nt0.82□□□□□ -2.28
SPB4P25808 YML100W-AYML100W-A 174 nt0.82□□□□□ -2.28
SPB4P25808 SOV1YMR066W 2697 nt0.78□□□□□ -2.29
SPB4P25808 FMP27YLR454W 7887 nt0.77□□□□□ -2.29
SPB4P25808 YMR272W-AYMR272W-A 114 nt0.76□□□□□ -2.29
SPB4P25808 MYO1YHR023W 5787 nt0.7□□□□□ -2.3
SPB4P25808 YKL106C-AYKL106C-A 120 nt0.68□□□□□ -2.3
SPB4P25808 UTP10YJL109C 5310 nt0.66□□□□□ -2.3
SPB4P25808 THO2YNL139C 4794 nt0.61□□□□□ -2.31
SPB4P25808 YOL013W-AYOL013W-A 192 nt0.55□□□□□ -2.32
SPB4P25808 YDL114W-AYDL114W-A 114 nt0.47□□□□□ -2.33
SPB4P25808 snR128snR128 126 nt0.44□□□□□ -2.34
SPB4P25808 snR75snR75 89 nt0.43□□□□□ -2.34
SPB4P25808 YER078W-AYER078W-A 165 nt0.43□□□□□ -2.34
SPB4P25808 tV(UAC)QtV(UAC)Q 76 nt0.43□□□□□ -2.34
SPB4P25808 YOR376W-AYOR376W-A 156 nt0.4□□□□□ -2.35
SPB4P25808 YJL113WYJL113W 4647 nt0.4□□□□□ -2.35
SPB4P25808 YOR316C-AYOR316C-A 210 nt0.38□□□□□ -2.35
SPB4P25808 SBH2YER019C-A 267 nt0.23□□□□□ -2.37
SPB4P25808 PAU9YBL108C-A 129 nt0.22□□□□□ -2.37
Retrieved 100 of 7,029 protein–RNA pairs in 55.6 ms