Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN9O95484 HLA-G-202ENST00000376815 851 ntBASIC19.29■□□□□ 0.68
CLDN9O95484 HLA-G-203ENST00000376818 1127 ntBASIC19.29■□□□□ 0.68
CLDN9O95484 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN9O95484 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN9O95484 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.29■□□□□ 0.68
CLDN9O95484 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.29■□□□□ 0.68
CLDN9O95484 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN9O95484 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CLDN9O95484 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN9O95484 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN9O95484 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.28■□□□□ 0.68
CLDN9O95484 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.28■□□□□ 0.68
CLDN9O95484 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 CDCA4P2-201ENST00000441182 718 ntBASIC19.28■□□□□ 0.68
CLDN9O95484 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.28■□□□□ 0.68
CLDN9O95484 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.28■□□□□ 0.68
CLDN9O95484 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN9O95484 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN9O95484 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN9O95484 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.28■□□□□ 0.68
CLDN9O95484 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.28■□□□□ 0.68
CLDN9O95484 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN9O95484 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN9O95484 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN9O95484 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN9O95484 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN9O95484 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN9O95484 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN9O95484 LSM12P1-201ENST00000411836 588 ntBASIC19.27■□□□□ 0.68
CLDN9O95484 AC026185.1-201ENST00000445748 174 ntBASIC19.27■□□□□ 0.68
CLDN9O95484 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN9O95484 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.27■□□□□ 0.68
CLDN9O95484 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN9O95484 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN9O95484 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLDN9O95484 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLDN9O95484 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
CLDN9O95484 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.27■□□□□ 0.67
CLDN9O95484 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CLDN9O95484 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN9O95484 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.26■□□□□ 0.67
CLDN9O95484 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.26■□□□□ 0.67
CLDN9O95484 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.26■□□□□ 0.67
CLDN9O95484 AC023632.3-201ENST00000521633 145 ntBASIC19.26■□□□□ 0.67
CLDN9O95484 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.26■□□□□ 0.67
CLDN9O95484 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN9O95484 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN9O95484 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN9O95484 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CLDN9O95484 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN9O95484 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.25■□□□□ 0.67
CLDN9O95484 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.25■□□□□ 0.67
CLDN9O95484 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.25■□□□□ 0.67
CLDN9O95484 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 AC009237.14-201ENST00000609975 1594 ntBASIC19.25■□□□□ 0.67
CLDN9O95484 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.25■□□□□ 0.67
CLDN9O95484 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.25■□□□□ 0.67
CLDN9O95484 AF201337.1-201ENST00000520239 748 ntBASIC19.25■□□□□ 0.67
CLDN9O95484 AC105036.2-201ENST00000569468 176 ntBASIC19.25■□□□□ 0.67
CLDN9O95484 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.25■□□□□ 0.67
CLDN9O95484 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CLDN9O95484 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN9O95484 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CLDN9O95484 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.25■□□□□ 0.67
CLDN9O95484 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms