Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC31.24■■■□□ 2.59
Chmp7Q8R1T1 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC31.24■■■□□ 2.59
Chmp7Q8R1T1 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Chmp7Q8R1T1 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Chmp7Q8R1T1 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Chmp7Q8R1T1 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Chmp7Q8R1T1 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
Chmp7Q8R1T1 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
Chmp7Q8R1T1 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Chmp7Q8R1T1 Gm11175-201ENSMUST00000116172 543 ntBASIC31.2■■■□□ 2.59
Chmp7Q8R1T1 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC31.2■■■□□ 2.59
Chmp7Q8R1T1 Particl-201ENSMUST00000205370 1560 ntBASIC31.2■■■□□ 2.58
Chmp7Q8R1T1 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Chmp7Q8R1T1 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Chmp7Q8R1T1 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Chmp7Q8R1T1 Mir6538-201ENSMUST00000183713 110 ntBASIC31.18■■■□□ 2.58
Chmp7Q8R1T1 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC31.17■■■□□ 2.58
Chmp7Q8R1T1 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
Chmp7Q8R1T1 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Chmp7Q8R1T1 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Chmp7Q8R1T1 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Chmp7Q8R1T1 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Chmp7Q8R1T1 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Chmp7Q8R1T1 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Chmp7Q8R1T1 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Chmp7Q8R1T1 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Chmp7Q8R1T1 AC167019.3-201ENSMUST00000228225 1266 ntBASIC31.11■■■□□ 2.57
Chmp7Q8R1T1 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
Chmp7Q8R1T1 Gm6311-201ENSMUST00000073790 878 ntBASIC31.11■■■□□ 2.57
Chmp7Q8R1T1 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Chmp7Q8R1T1 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Chmp7Q8R1T1 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
Chmp7Q8R1T1 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Chmp7Q8R1T1 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
Chmp7Q8R1T1 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Chmp7Q8R1T1 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
Chmp7Q8R1T1 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Chmp7Q8R1T1 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Chmp7Q8R1T1 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
Chmp7Q8R1T1 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
Chmp7Q8R1T1 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Chmp7Q8R1T1 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Chmp7Q8R1T1 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Chmp7Q8R1T1 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Chmp7Q8R1T1 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
Chmp7Q8R1T1 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Chmp7Q8R1T1 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
Chmp7Q8R1T1 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Chmp7Q8R1T1 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
Chmp7Q8R1T1 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC31■■■□□ 2.55
Chmp7Q8R1T1 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Chmp7Q8R1T1 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Chmp7Q8R1T1 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Chmp7Q8R1T1 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
Chmp7Q8R1T1 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
Chmp7Q8R1T1 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
Chmp7Q8R1T1 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC30.95■■■□□ 2.55
Chmp7Q8R1T1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.54
Chmp7Q8R1T1 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Chmp7Q8R1T1 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
Chmp7Q8R1T1 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC30.94■■■□□ 2.54
Chmp7Q8R1T1 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC30.94■■■□□ 2.54
Chmp7Q8R1T1 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Chmp7Q8R1T1 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Chmp7Q8R1T1 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Chmp7Q8R1T1 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Chmp7Q8R1T1 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Chmp7Q8R1T1 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.92■■■□□ 2.54
Chmp7Q8R1T1 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
Chmp7Q8R1T1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC30.88■■■□□ 2.53
Chmp7Q8R1T1 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
Chmp7Q8R1T1 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Chmp7Q8R1T1 Cap2-205ENSMUST00000225824 1634 ntBASIC30.85■■■□□ 2.53
Chmp7Q8R1T1 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
Chmp7Q8R1T1 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
Chmp7Q8R1T1 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Chmp7Q8R1T1 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.53
Chmp7Q8R1T1 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Chmp7Q8R1T1 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Chmp7Q8R1T1 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Chmp7Q8R1T1 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
Chmp7Q8R1T1 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
Chmp7Q8R1T1 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Chmp7Q8R1T1 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
Chmp7Q8R1T1 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Chmp7Q8R1T1 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC30.79■■■□□ 2.52
Chmp7Q8R1T1 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
Chmp7Q8R1T1 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.78■■■□□ 2.52
Chmp7Q8R1T1 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Chmp7Q8R1T1 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Chmp7Q8R1T1 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Chmp7Q8R1T1 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
Chmp7Q8R1T1 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Chmp7Q8R1T1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
Chmp7Q8R1T1 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Chmp7Q8R1T1 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Chmp7Q8R1T1 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC30.74■■■□□ 2.51
Chmp7Q8R1T1 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Chmp7Q8R1T1 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Chmp7Q8R1T1 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC30.73■■■□□ 2.51
Retrieved 100 of 76,532 protein–RNA pairs in 61.6 ms