Protein–RNA interactions for Protein: Q8C2S0

Usp44, Ubiquitin carboxyl-terminal hydrolase 44, mousemouse

Predictions only

Length 711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp44Q8C2S0 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC28.47■■■□□ 2.15
Usp44Q8C2S0 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Usp44Q8C2S0 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Usp44Q8C2S0 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Usp44Q8C2S0 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Usp44Q8C2S0 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC28.43■■■□□ 2.14
Usp44Q8C2S0 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Usp44Q8C2S0 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Usp44Q8C2S0 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
Usp44Q8C2S0 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
Usp44Q8C2S0 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Usp44Q8C2S0 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Usp44Q8C2S0 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.4■■■□□ 2.14
Usp44Q8C2S0 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Usp44Q8C2S0 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Usp44Q8C2S0 Gm30023-201ENSMUST00000197970 889 ntBASIC28.39■■■□□ 2.14
Usp44Q8C2S0 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Usp44Q8C2S0 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Usp44Q8C2S0 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC28.38■■■□□ 2.13
Usp44Q8C2S0 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp44Q8C2S0 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp44Q8C2S0 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC28.37■■■□□ 2.13
Usp44Q8C2S0 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Usp44Q8C2S0 Gm42809-201ENSMUST00000198429 1138 ntBASIC28.36■■■□□ 2.13
Usp44Q8C2S0 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Usp44Q8C2S0 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
Usp44Q8C2S0 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC28.35■■■□□ 2.13
Usp44Q8C2S0 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Usp44Q8C2S0 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC28.34■■■□□ 2.13
Usp44Q8C2S0 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Usp44Q8C2S0 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Usp44Q8C2S0 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC28.33■■■□□ 2.13
Usp44Q8C2S0 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
Usp44Q8C2S0 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC28.32■■■□□ 2.12
Usp44Q8C2S0 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Usp44Q8C2S0 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
Usp44Q8C2S0 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Usp44Q8C2S0 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
Usp44Q8C2S0 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Usp44Q8C2S0 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Usp44Q8C2S0 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
Usp44Q8C2S0 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Usp44Q8C2S0 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Usp44Q8C2S0 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
Usp44Q8C2S0 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
Usp44Q8C2S0 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Usp44Q8C2S0 Nkain2-201ENSMUST00000092602 558 ntBASIC28.28■■■□□ 2.12
Usp44Q8C2S0 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
Usp44Q8C2S0 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Usp44Q8C2S0 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Usp44Q8C2S0 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
Usp44Q8C2S0 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.25■■■□□ 2.11
Usp44Q8C2S0 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Usp44Q8C2S0 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Usp44Q8C2S0 Gm9939-201ENSMUST00000067161 1154 ntBASIC28.25■■■□□ 2.11
Usp44Q8C2S0 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Usp44Q8C2S0 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Usp44Q8C2S0 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC28.24■■■□□ 2.11
Usp44Q8C2S0 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC28.23■■■□□ 2.11
Usp44Q8C2S0 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
Usp44Q8C2S0 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC28.22■■■□□ 2.11
Usp44Q8C2S0 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
Usp44Q8C2S0 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Usp44Q8C2S0 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
Usp44Q8C2S0 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Usp44Q8C2S0 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Usp44Q8C2S0 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
Usp44Q8C2S0 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC28.17■■■□□ 2.1
Usp44Q8C2S0 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
Usp44Q8C2S0 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC28.15■■■□□ 2.1
Usp44Q8C2S0 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC28.15■■■□□ 2.1
Usp44Q8C2S0 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Usp44Q8C2S0 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
Usp44Q8C2S0 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Usp44Q8C2S0 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Usp44Q8C2S0 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Usp44Q8C2S0 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Usp44Q8C2S0 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Usp44Q8C2S0 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Usp44Q8C2S0 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC28.12■■■□□ 2.09
Usp44Q8C2S0 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Usp44Q8C2S0 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Usp44Q8C2S0 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Usp44Q8C2S0 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
Usp44Q8C2S0 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
Usp44Q8C2S0 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Usp44Q8C2S0 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
Usp44Q8C2S0 Gm6821-201ENSMUST00000107540 542 ntBASIC28.06■■■□□ 2.08
Usp44Q8C2S0 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC28.06■■■□□ 2.08
Usp44Q8C2S0 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC28.05■■■□□ 2.08
Usp44Q8C2S0 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC28.05■■■□□ 2.08
Usp44Q8C2S0 Gm8503-201ENSMUST00000118131 455 ntBASIC28.04■■■□□ 2.08
Usp44Q8C2S0 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Usp44Q8C2S0 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Usp44Q8C2S0 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Usp44Q8C2S0 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Usp44Q8C2S0 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC28.04■■■□□ 2.08
Usp44Q8C2S0 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Usp44Q8C2S0 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Usp44Q8C2S0 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms